Paraburkholderia phytofirmans PsJN: Bphyt_2622
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Entry
Bphyt_2622 CDS
T00765
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpy03019
]
Bphyt_2622
Enzymes [BR:
bpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bphyt_2622
Messenger RNA biogenesis [BR:
bpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Bphyt_2622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
Motif
Other DBs
NCBI-ProteinID:
ACD17017
UniProt:
B2T5R5
LinkDB
All DBs
Position
1:complement(2965238..2969200)
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AA seq
1320 aa
AA seq
DB search
MVEPNPIPPITYPEALPVSGRREEIAKAIARNQVVIVCGETGSGKTTQLPKICLELGRGL
GAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKLMTDGI
LLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILVKRPDLKLIVTSATIDADRF
ARHFGSDEKPAPVIEVSGRLYPVEVRYRPVAEDSPAVKAAQGDAPSAPRGDRPKSQRETD
RDLMDAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAAE
QERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVESISQA
AANQRAGRCGRVADGICIRLYEESDYQSRARFTDPEILRSSLASVILRMKSLHLTAIETF
PFIEPPPGRAIADGYQLLNELGAVDDDNQLTPLGRELARLPLDPRVGRMILAARDQQALK
EVLIIASALSVQDPRDRPIEAQEQADQAHRRFADDRSEFLQWLKIWNWFEEAIAHKKSNK
QLHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWRLNEAEATFEQIHLALLTGLLGNIG
LKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAAELVETSRLYARCIAKIEPEWIEKI
GAHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYHRRRVSFGKQDPARARELFIRGALV
EGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIFAYYDQALPKGIYTGASFER
WYRDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMAGVEMALTYHFEPGS
PRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKTQLLLKSLPQKLRRHCVPLPEYAAGFV
DRHSGPRFGAGGLLESLIADVREQTQVAMKQSDFKLETLPPHLFMNFKVVDEHGRQLAMG
RNMSQLRAELGGQAQQHFQKIASSAAGAALADAGGGGVATPAQTTGAAGAGALRGKGGVG
AASGPQTAPQGGAQGTALYERLTTWNFGKLPELLEIRRGGQTLFGYPALVDRGTHCDVEV
FDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQFMPRGTQEELRDQLIDT
ALDRACLQDPLPDDDVSFHTRRDEGRSRLTLLAQEIARLVGQILGEYASVAKKLVQAKSF
TAAYADLQNQLDGLIGKRFVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQFAEFQ
PLLQNYQRAVAQRGGVLDPRLSEFRWLLEELRISLFAQELRTPMPISVKRLYKVWESMQR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgagcccaatccgattccgccgattacttacccggaagcgctgccggtttcaggc
cgtcgcgaggaaatcgccaaagccattgcccggaatcaggtcgtgatcgtctgcggcgaa
accggctccggtaaaaccacccagctgccgaaaatctgcctcgaacttgggcgcggtctc
ggcgcgggcggctccgggctgatcggccacacgcagccgcgccggatcgccgcgtcggcg
accggccgccgcatcgccgaagaactcggcacgccgttcggcgaagtggtcggctacaag
gtgcgcttcaccgacaatctgtcgccgggcgcctccgtcaagctgatgaccgacggtatt
ctgctcgccgaaacgcaaaccgatccgctgctgaaagcgtacgacacgctgatcatcgac
gaggcgcacgagcgcagcctgaacatcgactttctgctcggctatctgaaggaaattctc
gtcaagcgtccggatctgaagctgatcgtgacctcagcgacgatcgacgcggatcgtttc
gcgcgccacttcggcagcgacgagaaacccgcgccggtgatcgaggtgagcgggcggctg
tatccggtcgaggtgcgctaccggccggtcgcggaagatagccccgccgtgaaggccgcg
cagggcgatgcgccgtcggcgccgcgcggcgaccggccgaaatcgcagcgcgaaaccgat
cgcgatctgatggacgcgatcgtcgacgccgtcgacgaactctgccgcgaaggcccgggc
gacgtgctcgtgttcctgcccggcgagcgcgaaatccgcgacgccgccgaggcgctgcgc
aagcatcatccgccgcatacggaaattctgccgctgttcgcgcggctttccgcggccgaa
caggagcgcgtgttccgcacctcgaacgcgcgccgcatcgtgctggccaccaacgtcgcc
gaaacctcgctgacggtgccgggcattcgctatgtggtcgacaccggcctcgcgcgcgtg
aagcgctactcgtatcgcaacaaggtcgagcagttgcaggtcgagtcgatttcgcaggcc
gccgcgaatcagcgggccgggcgttgcggccgcgtcgctgacggcatctgcatccgtctc
tatgaggaaagcgattatcagagccgcgcgcggtttacggatccggagattctgcgttcg
tcgctggcctcggtgattctgcgcatgaagtcgctccatctgacggcgatcgagacgttc
ccgttcatcgagccgccgccgggccgcgcgatcgccgacggctatcagctgctcaacgaa
ctcggcgccgtcgacgacgacaatcagctcacgccgctcggccgcgaactcgcgcgcctg
ccgctcgatccgcgtgtcggccggatgattctcgccgcgcgcgaccagcaggcgttgaag
gaagtgctgatcatcgccagcgccttgtcagtgcaggatccgcgcgaccggccgatcgaa
gcgcaggagcaggccgatcaggcgcatcgccgtttcgccgacgatcgctccgaattcctg
cagtggctgaaaatctggaactggttcgaagaagcgatcgcgcacaagaagtcgaacaag
cagctgcacgaagagtgccgcaagaacttcctgtcgcaactgcgcctgcgcgaatggcgc
gacgtgcactcgcaactgctgaccgtcgtgcgcgagcacggctggcgtctgaacgaggcg
gaagcgactttcgagcagatccatctcgcgctgctgactggcctgctcggcaacatcggc
ctcaaagccgacgacgaaccgtattacctcggcgcgcggggcatcaagttctatctgtgg
ccaggctcggcgttggtgaagaaggctggaaagtgggtgatggccgccgaactggtcgag
acgagccgcctgtacgcgcgttgcatcgcgaagatcgagccggagtggatcgagaagatt
ggcgcgcatctgttgaagaagtcgctttccgagccgcattgggagaagcgcgcggcgcag
gtctcggcgttcgagcgcgcggtgctgtacggcctgccgatctatcaccggcggcgcgtg
agcttcggcaaacaggatccggcgcgtgcccgcgagctgttcattcgcggcgcgctagtg
gagggcgagttcgatacaaagctcgcgttttttgctcataaccgcaagctgctcgccgat
atcgagcagcttgaacacaagtcgcgccgccaggacgtgctggtcgacgacgaactgatc
ttcgcctattacgatcaggcattgccgaaaggcatttacaccggcgcgtcgttcgaacgc
tggtatcgcgacgaagtgaaaaagagcggccagccggaagacaagctgcgcctgctgtat
ttgtcgcgtgacgatctgatgcggcacgaagccgccggcgtgaccaccgatctgttcccg
aaacggatgacgatggcgggcgtcgagatggcgctcacttaccacttcgagccgggttcg
ccgcgtgatggcgtgacgctcgccgtgccgctgtatgcactgaatcaggtcgacgcgcgg
cgctgcgaatggctcgtgcctggcatgctgaaagagaagacgcaactgctgctcaagtcc
ttgcctcaaaagttgaggcggcattgcgtgccgctgcccgagtacgccgcgggtttcgtc
gatcggcacagcggtccgcgctttggtgcgggcggtttgctcgagtcgctgatcgccgac
gttcgcgaacagacgcaagtcgcgatgaagcagtcggacttcaagctcgagaccttgccg
ccgcatctgttcatgaatttcaaggtcgtcgacgagcatggacgccagctcgcgatgggc
cgcaacatgtcgcaactgcgcgccgaactcggcggccaggcgcagcagcattttcagaaa
atcgcgtcgagcgccgccggggcggcgttggcggacgcgggcggcggcggtgtcgcgacg
ccggcgcaaaccaccggtgcggccggcgcgggcgcgctgcggggcaaaggcggtgtgggc
gcagcgtcaggtccgcagaccgcgccgcagggcggggcgcagggcacggcgctgtatgaa
aggctgacgacatggaatttcggcaagcttcccgagttgctcgaaatccgtcgcggcggg
cagacgttgttcggttatccggcgctggtggatcgcggcacgcattgcgacgtcgaagtg
ttcgattcacccgacgaggccgcacggattcatcgcgcgggattgcgtcggctgttcgcg
ttgcagttgaaggagccgatcaagtatctggaaaagaatctgccgggtctgcgcgaaatg
gcgatgcagttcatgccgcgcggcacgcaggaagagttgcgcgatcagttgatcgacact
gcactcgaccgcgcgtgcctgcaagacccgctgcccgatgacgacgtcagtttccacacg
cgccgcgacgaaggccgcagccgcctgaccctgctcgctcaggaaattgcccggctggtc
gggcagattctgggcgaatacgcgagcgtcgcgaagaagctggtgcaggcgaagtcgttc
acggcggcgtatgccgatttgcagaaccagctcgacggactgatcggcaagcgcttcgtg
gtcgatacgccgtacgcgcaactggcgcatttcccgcgctatctcaaggggatcgcgctg
cgcatcgacaagctgaaggcggaccccgcgcgcgacgcacggcagttcgccgaattccag
ccgctgctgcagaactatcagcgcgccgtggcgcaacgcggcggtgtgctggatccgcgt
ttgtcggagttccgctggttgttggaagagttgcggatctcgctgtttgcgcaggagttg
cgtacgccgatgccgatttcggtgaagcggctttataaagtgtgggagtcgatgcagcgc
tga
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