Paraburkholderia phytofirmans PsJN: Bphyt_3420
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Entry
Bphyt_3420 CDS
T00765
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpy03016
]
Bphyt_3420
Enzymes [BR:
bpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bphyt_3420
Transfer RNA biogenesis [BR:
bpy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Bphyt_3420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACD17810
UniProt:
B2SYS5
LinkDB
All DBs
Position
1:complement(3850091..3852208)
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AA seq
705 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPSAAELMQQADAA
AQEIDLDFLWECAPDDEFPFATLGAEYFGESFGSIERAALVLRMHGSPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQAGYEDELKAGRLPEAFTGSKALGLLTKPDKNTIEYK
ALEAAAAARGISQARLMLENGAIPSARALHEAKFLSEFFPHGTGFPPVTVGSLPEDLPEA
NVQAFSIDDITTTEIDDAFSVEHLADGRVRIGVHIAAPALGIQRGDEVDAIARTRLSTVY
MPGDKITMLPDSVVEAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGSGDYPHKDDIAVLWPFAQALFEKRQAARAGYGLRREVQRNTDFNFY
VEGEHITITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLIACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYTAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPTVTSGSEAEEADEGEEEIIDAADES
AEGEAEAQAKAELDGNDAAAVKDDAESSEGADGAATHQHIAEPGR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggccggcagcgtgctgtcgcgccag
ggcgatgcttttcaggtcgagctgccgggcggccggcgcgccaaggtgcgcgcgaaagac
gtgctgatcgaattcgaaaagccgagcgcggccgaactgatgcaacaggccgacgccgcc
gcgcaggagatcgatctggacttcctgtgggagtgcgcgcctgacgacgaatttccgttc
gcgaccctcggcgccgaatatttcggcgaaagcttcgggtcgatcgagcgcgccgcgctg
gtgttgcgcatgcatggctcgccggtgtacttccgccgcaagggccgcggcatgtatcag
cgcgcgccgcaggaacaactgaagatggcgctcgccggcctcgagcgcaaacgccagcag
gcgctggtgcaggcaggatacgaagacgagctgaaagccggccgtctgccggaagctttc
accggcagcaaggcgctggggctgttgaccaagccggacaagaacacgatcgagtacaag
gcgctcgaagccgcggcggcggcgcgcggtatttcgcaagcgcgtctgatgctggaaaac
ggtgccattccgtcggcgcgtgcgctgcacgaagcgaaattcctctccgagtttttcccg
cacggcacgggctttccgcctgtcaccgtcggcagcttgccggaggatctgcccgaagcg
aacgtgcaggcgttttcgatcgacgacatcaccacgactgaaatcgacgatgctttctcc
gtcgagcatctggccgatggccgcgtgcggatcggcgtgcacatcgccgcgccggcgctc
ggcattcagcggggcgacgaggtcgatgcgatcgcgcgcacgcgtctgtcgaccgtgtat
atgccgggcgacaaaatcaccatgctgcccgacagcgttgtcgaagcgttcacgctggcc
gaaggcggcttgcgtccggcgctctcgctgtatgtgatcgtcaatcgcgagacgcaggag
atcgttgcgagcgaaacgcgcgccgagcgcgtgttcgtgaagaacaacctgcgccacaac
acactcgacgagttggtcaccgaagaggcgctcgccgccggcagcggcgactatccgcac
aaggacgatatcgccgtgctgtggccgttcgcgcaggcgctgttcgaaaagcgccaggcc
gcgcgcgccggctacggtttgcgtcgcgaagtgcagcgcaacaccgacttcaacttctac
gtggaaggcgagcacatcacgatcacgccgcgccgtcgtgggtcgccgctcgatacgatc
gtcgccgaactggcgattctcgcgaactcatcgtggggcgcgttcctgcatgaccacggc
gtgccgggcatttaccgcacgcaacgcgcattcggcgcgccaaccggcccgaagcgcacg
cgcatgcagaccaacgccgcgccgcacgaaggcctcggcgtcacgcaatacgcgtggagc
acatcgccgctgcgccgttacgtcgacctggtgaaccagtggcagttgattgcctgcgtg
cagcatggcgtgaccgcgaaactggctgcgccgttcaagcccaaagacgccgatctgttc
gccgtcgtgcagggtttcgacgatacgtacaccgcgtatgccgatcatcagcgtcgcatg
gaatatttctggtgcctgcgctggctgaagcaggagaacaggaagcaggtcgtggcgtcg
gtggtgaagggcgatctggtgcgtcttgaagagattccgctgcttctgcatgtgccgggc
ctcggcgtgcacgcgcgcggcacgcgtttgcagatggaagtgatgtcgatcgatgagttg
accgtcgaagcgtccgtgcgtctgctgcacgtgctcgacgcgccgacggtgacgagcggc
agcgaggctgaagaagcggacgagggcgaagaggagatcatcgacgccgcggacgagagc
gccgaaggcgaagccgaggcgcaggccaaagccgaactcgacggcaacgacgcggctgcc
gtgaaggacgacgccgaaagcagcgagggtgcggacggtgccgctacgcatcagcacatt
gcggagccgggacgatga
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