Paraburkholderia phytofirmans PsJN: Bphyt_3650
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Entry
Bphyt_3650 CDS
T00765
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphyt_3650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpy03019
]
Bphyt_3650
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_3650
Enzymes [BR:
bpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bphyt_3650
Messenger RNA biogenesis [BR:
bpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bphyt_3650
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bphyt_3650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
SaeA_1st
Motif
Other DBs
NCBI-ProteinID:
ACD18040
UniProt:
B2T757
LinkDB
All DBs
Position
1:complement(4080205..4082052)
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AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRREGGF
GTGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGDIDLLYVAPER
LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
DITRDEIIHRLALDDARVFVSSFDRPNIRYRIVEKDNARAQLLDFIRAEHSKPDGTTDAG
VVYCLSRRKVEETAEWLKEKGMSALPYHAGMEFEIRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTGKLDALLGLCEAATCRRVRLLGYFGESSKPCGNCDNCLEPPDTWDATREARMA
LSCVFRAQRASGFHFGAGHLIDILRGNSSEKILQRGHEKLTTFGIGSALGEQEWRAVFRQ
LVAFGYLTVDHEGFGSLVLTEASKPVLKGEQNVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWERLRAWRTETAKSDGVPAYVIFHDATLAEIARNGPDSIDDLRGIPGMGARK
LDRFGDELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctcgaaattctcaacgaagtcttcggttaccccgcgttcagagggcag
cagggcgaaattgtcgagcacgtcgccggcggcggcgactgcctcgtgttgatgccgacg
ggcggcggcaagtccctctgctatcagattccgtcgctggtacggcgcgaaggcggcttc
ggcaccggaatcgtcgtttctcctctgatcgcgctgatgcaggatcaggtcgccgcgctc
accgaagtgggcgtgcgcgcggcatatctgaattcgacgctctcgagcgccgaggcgatg
gcgaccgagcgcgcgttgcgcgacggtgatatcgatctgctctacgtggcgccggaacgt
ttgatgacaccccgtttccaggagttgctggagcgcacgcgtataggcttgttcgccatc
gacgaagcccattgcgtgtcgcaatgggggcacgatttccgcccggaatacattcagttg
tcggtgctgcacgagcgcttcccgaacgtgccgcgaatcgcgctgacggccaccgctgac
gacatcacgcgcgacgagatcatccaccgcctggcgctggacgatgcgcgcgttttcgtg
tcgagcttcgaccggccgaacattcgttatcgcatcgtcgagaaggacaatgcgcgtgcg
cagttgctggacttcatccgcgcggagcattcaaagccggacggcacgaccgacgccggc
gtcgtctactgcctgtcgcgccgtaaggtcgaggagacggcggaatggctgaaggaaaaa
ggcatgagcgcgctgccgtatcacgccggcatggagttcgaaatccgccagaagcatcag
gagatgtttcagcgcgaggaagggattgtgatgtgcgcgacgatcgcattcggtatgggc
atcgacaaaccggacgtgcgttttgtcgctcacctcgacctcccgaagagtgtcgaaggc
tactaccaggaaacgggtcgcgcgggccgcgacggcatgccggcgaatgcatggatggcc
tacggtctcggcgacgtcgtgcagcagcgcaaaatgatcgacgaatccgacgccgacgac
gcgcacaagcgcgtccagaccggcaagctggatgcgttgctcggattgtgcgaagcggcg
acctgccggcgagtgcgactgctcgggtatttcggtgaatcgagcaagccttgcggcaat
tgcgacaactgccttgaaccgccggacacatgggacgcaacgcgtgaggcgcgcatggcg
ctgtcgtgtgtgttccgcgcacagcgcgcgagcggctttcatttcggcgccggtcatcta
atcgacatcctgcgcggtaacagcagcgagaaaatcctgcagcgtggtcacgagaagctg
accacattcggcatcggttcggcgctaggcgagcaggagtggcgagcagttttccgccag
ttggtcgcgttcggctatctgacggtcgatcacgaaggcttcggctcactcgtcctgacc
gaggcaagcaagccggtgctcaaaggtgagcagaacgtcaccatgcgccgctatgtgaag
cctacgcgcacgcgtcaatcgtccggccgcaccagtgagcgcgccgacccgacgatcggc
atgggcccgcgcgaacgcgcgcgctgggagcggttgcgggcatggcgcactgaaactgcg
aagagcgacggcgtgccggcctacgtgattttccacgatgcaaccctggcggaaattgcc
cgcaacggccctgactcgattgacgatttgcgcggtatcccgggtatgggcgcacgcaaa
ctcgaccgtttcggcgatgaattgctggaagtcgtcgccgccgactaa
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