Paraburkholderia phytofirmans PsJN: Bphyt_5444
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Entry
Bphyt_5444 CDS
T00765
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpy03032
]
Bphyt_5444
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_5444
Enzymes [BR:
bpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Bphyt_5444
DNA replication proteins [BR:
bpy03032
]
Prokaryotic type
DNA Topoisomerases
Bphyt_5444
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Bphyt_5444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CaMKII_AD
Motif
Other DBs
NCBI-ProteinID:
ACD19802
UniProt:
B2TGP2
LinkDB
All DBs
Position
2:1643363..1644682
Genome browser
AA seq
439 aa
AA seq
DB search
MAATSTPIQRRPERTDDDSAKQPTPAVMPPGLRHADDTKPGITRQREKDGFAYFDVAGKR
IVDEDEIKRINALAIPPAYESVWICPDARGHIQATGRDARGRKQYRYHPRWRETRDADKY
ERMAEFGRALPKIRARVARDLNLPGMPCDKVVAAIVQLLDTTLIRIGSVEYARDNQSYGL
TTLRKKHVKIEAGQLRFKFRGKSGIEHDVTVNNPRIKRIVRRCAELPGHDLFQYLDEDGT
RRTVGSADINDYLRRASGADFTAKDYRTWAGSVYALAALRRLMCSSAAEARRHIVATVKD
VAALLRNTPAVCRRCYIHPAVISSFEADELQRLAPGQSRRGLRVDEVALATLLAQAEKRA
TKLARQAGAKGRKARESAVTESIDGSITSLLKKSRVVRKAAAAKVDAKSGAQAARRAAAP
RVAGTRAAGASRAVKQTAP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacctccaccccgattcaacgccgccctgaacgcacggacgacgacagcgcg
aaacagccgacgcccgccgtcatgccgccgggtttgcgccatgccgacgacacgaaaccc
ggtatcacgcgtcagcgtgaaaaagacggcttcgcgtatttcgacgtggcgggcaaacgc
atcgtcgatgaagacgaaatcaaacgcatcaacgcgcttgccattccgccggcgtatgaa
agcgtgtggatctgtccggatgcgcgcggccatatccaggcgacgggccgcgatgcgcgc
ggccgcaagcaataccgctatcacccgcgctggcgcgaaacgcgcgacgcggacaaatac
gagcgcatggccgagttcggccgtgcattgcccaagatccgcgcccgtgtcgcgcgcgat
ctaaatctgccgggcatgccgtgcgacaaagtcgtcgccgcgatcgtgcagttgctcgac
acaacgctgatccggatcggcagcgtggaatacgcgcgcgataaccagtcgtacggtttg
acgacgctgcgcaagaagcacgtgaaaatcgaagccggccagttgcgcttcaagtttcgc
ggcaagagcggcatcgagcacgacgtgacggtgaacaatccgcgcatcaaacgcatcgtg
cgacgttgcgccgaattgccgggccacgacctgttccagtatctcgacgaagacggtacg
cgccgcaccgtcggctctgccgatatcaacgactatctgcgtcgcgcgagcggcgcggat
ttcacggccaaggactatcgcacgtgggccggcagcgtctatgcgctggccgcgctgcgt
cgcctgatgtgcagcagtgcggcggaagcgcgccgtcatatcgtcgcgaccgtgaaggac
gtggcggcgttactgcgcaatacgccggccgtgtgcaggcgttgctacatccatcccgcc
gtgatcagctcgttcgaagcggacgaattgcagcgtctggcgccagggcaatcgcgccgc
gggctgagagtggatgaagtcgccttggccacgctgctcgcgcaagcggagaaacgcgcg
acgaagctcgcgcggcaggccggcgcgaaaggccgcaaggcgcgcgaatcggccgtgacg
gaaagcatcgacggttcgatcacgagtttgctgaagaagtcgcgcgtggtgcgcaaggcc
gcagccgcaaaggttgatgcgaagtccggtgcgcaagccgcacggcgcgcggccgcgccg
cgggttgcgggcacgcgcgcggcgggtgcatcacgtgcagtgaaacagaccgcaccttga
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