Bombus pyrosoma: 122565997
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Entry
122565997 CDS
T07776
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122565997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122565997
03041 Spliceosome [BR:
bpyo03041
]
122565997
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122565997
Spliceosome [BR:
bpyo03041
]
Complex B
Other components
Prp19-related factors
122565997
Complex C
122565997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
TPR_10
RPN7
DHR-2_Lobe_A
PPR
4HB_MCP_1
ARM_TT21_4th
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
122565997
NCBI-ProteinID:
XP_043578579
LinkDB
All DBs
Position
LG3:8701594..8705505
Genome browser
AA seq
839 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSLSDIPTDAMRLLDSKTQDNITTYKDSIKFVRG
AIEKDGKAESQVNNPDEIDIDIDDVDDTEADVEEDIPVEKQTIPSQVFGSLKTTDGEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagatccagaaggaaatctatatgtttttaatgaagaagatttacca
tacgaagaagaaattttgagaaatccttattctgtgaaacattggcaacgttatatagat
catttaaaaagtacaaaaagcagtaatttaaacattgtgtacgaacgagcgttaaaggaa
cttcctggaagctataagttatggtacaattatctacgtcaacgtgttaaccaattgaaa
gggaggtgcataacagatccgctttatgaagatgtaaataatgcatttgagcgtgctttg
gtttttatgcataaaatgcccagaatttggatggactattgcacattgatgacagaacaa
tgttatattacgcgtactcgtcaagtttttgatcgagcacttagagctctccctatcacg
caacatcatcgtatatggccattgtatattgaatttttaaaaaagcataatgtctatgaa
actgcagtcagagtttttagaagatatcttaagctagctccagaagatacagaagagtat
atagaatacctgatatcaatcgggaggcttgacgaagcagctgtgaaacttgcacaaatt
gtcaatcaagatgattttgtatcaaagcatgggaagtctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgcaatt
attagaggcggtttaagacgttatactgatcagttaggccctctttggaattctttggcg
gattattatgttcgtagcggtttattcgaaagggcgagggatatttatgaagaagcaata
caaacagtgactactgttagagactttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagcaaacgtatggaagaagctgcaaaaaatcctactgaagatgatgat
atagatctagaattgagattagcacgatttgaacatttaatggaaaggcgtttattactt
ctgaattctgtattactcagacaaaatcctcataatgtacaagaatggcataaaagagtt
aggctttatgagggacaaccacacgagattattaatacatatacagaagctgtacagact
gtacaaccacaattagcagtcggtaaattgcatactttgtgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagacgctagagtagttttcgagaaagcaactcatgtt
ccctatactaaagtcgatgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
aggcatggaaattataaagaagcgttaaaacttatgcatcgtgctactgctatgccattc
cgtaaggtagcttaccatgacgagacagaaacagttcaaatgagattgtataaatcttta
aaagtttggtctatgtatgccgatttagaagaaagttttgggactttcaagacatgcaaa
gctgtgtacgacaaaattatagatctaaaaatcgcaacaccgcaaatcattattaattat
ggactctttctcgaagaaaatagatattttgaagaagctttcagagcttatgaaaaaggt
attgcactcttcaaatggcctaacgtttatgatatatggaatacgtatcttacaaaattt
ttaaaacgttatggtggaacaaagttagaacgaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgccaaagccttgtatttactgtatgcaaaattagaagag
gaacatggtttggctaggcatgcaatgtctgtatatgaacgagcaactaacgctgttctt
cctgaagaaaaatttgagatgttcaacatatatattaaaaaagcagcagacatatatggt
gtcccaaaaacgagacagatatatgaaaaagctatcgaagtacttaatgaagataatacg
agagaaatgtgtttacggtttgcagaaatggagacgaaattaggagaagttgacagagct
cgggcaatatatgcgcactgcagtcaaatttgcgatccaagggtggcttcaaatttctgg
caaatatggaaagagtttgaagtgagacatggtaatgaagatactatgcgtgaaatgctt
cgaattaagcgtagtgtacaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttaaataatacatcaaactcactatctgatataccaacagatgcaatgcgtcttttg
gatagtaaaacacaggataatattaccacatataaggacagcattaaatttgttcgtggt
gcgatagaaaaagatggtaaagcagaatctcaagtaaacaatccggatgaaatagatatt
gatattgatgacgttgatgacactgaagcggatgtagaggaagacatacctgttgagaaa
caaactattccatcacaagtatttggtagtttgaagacaactgatggtgaagatgattaa
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