Bombus pyrosoma: 122566223
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Entry
122566223 CDS
T07776
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03030
DNA replication
bpyo03410
Base excision repair
bpyo03420
Nucleotide excision repair
bpyo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122566223
03410 Base excision repair
122566223
03420 Nucleotide excision repair
122566223
03430 Mismatch repair
122566223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpyo03032
]
122566223
03400 DNA repair and recombination proteins [BR:
bpyo03400
]
122566223
DNA replication proteins [BR:
bpyo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122566223
DNA repair and recombination proteins [BR:
bpyo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122566223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
BRCT_2
AAA_22
AAA_14
AAA_30
RuvB_N
RNA_helicase
AAA_19
PTCB-BRCT
AAA_assoc_2
AAA_33
NTPase_1
AAA_5
AAA_7
AAA_16
AAA_11
Motif
Other DBs
NCBI-GeneID:
122566223
NCBI-ProteinID:
XP_043579115
LinkDB
All DBs
Position
LG3:complement(8454484..8460292)
Genome browser
AA seq
1050 aa
AA seq
DB search
MPRDIRSYFQTIKTNSNVAPAKATKKRIIISSDEDEDKSQSPRKRPKKTKLLEKKTIKSD
SDEDIKIISPADMFGKNPVSRQEATKISRQSLKQKAEEVPKISKKLQKKEAEGHNDDDFE
ATLRQLDTSDIEQRYLTEIKVNEDTNLHESNIENKEKTPIKNKEDVKKKTRPDKTDQKKD
NKEHEPKNKKHSNNISDEDIKHKGSENSNKFKHTKKCSKTSSAISKMEVEYLKEKKETSP
KKIDTFDVYEEKIEKKKQNAAMYQQYLQRGGARNPGSKEIPVGAEQCLTGLSFVITGVLD
SLEREEAEELIKQYGGRILHQISKKTDYVIVGDQAGPAKLSKATTLNIKKISEDDLLELI
RTRPAGQSDNATQPCAKSKERSKRKSAESSEESTPKKKKITVNEETKKAAKVHSPHKSES
SKKEIEDSLKQELYNKDEKIKSSIEKKQNKHKESLVQDKKEIIDVKDIKIQTNTLQDING
NTPVQALVEKYRPKTMKQILGQQGDKSNAKKIYTWLMNWHKNQSGQVKHTRPSPWAKDDS
GAFFKAALLSGPPGIGKTTTVQVVCNELGFDLIEFNASDTRSKKLLQEEVSELLSNTTIK
NYFKDVKSKPSSKHVLLMDEVDGMAGNEDRGGLQELINLIKSTDIPIVCICNDRNNPKMR
TLSNYTFDLRFPKPRLEQIRGAMKSMCFKENIQISNEDLDRLIESTNQDIRQVINHLALF
VGQTGSQEKSEKKHINKDLRLGPWDVVKKVFSIEEHKHMSISDKSNLFFHDYNIAPLFVQ
ENYLMVIPQVPKSELLGRVAESAESIALGDVVEKSIRSNNAWSLLPIQAYYSSVIPGTAM
SGHIGGQINFPAWLGRNSKTGKLNRLMQEITSHARLATGASKEAINLDYIRPLRNTILRP
LAVGGIENVDAAIDVMNQYHLLREDLDSLVEISLWPGDRDPFQIIDSKVKAAFTRAYNKN
SVALPYIVSGTSKKKVTSSIQEGFLEEEEEEIDSDQNDDNIDADKMIKAKKAGTNKNTES
KGKNADKTEKKGKNSSDKSNKRGRGQGKAK
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgccaagggatatacgatcctattttcaaactattaaaacaaattccaatgttgctcca
gcgaaagctaccaaaaaacgaattattatttcgtctgacgaagatgaggacaaatcccaa
tcgccacgtaaacggcccaagaagacaaagttattggagaagaaaactattaaatctgat
tccgatgaagatattaaaatcatttctcctgctgatatgtttggtaaaaatccagtaagc
agacaagaagcaactaagatatctagacagtcattaaagcagaaagctgaagaagttcct
aagatatctaaaaagttacaaaagaaggaggctgaaggtcataatgatgatgattttgaa
gctaccttacgtcagttagatacatctgatattgagcagagatatttaacagagattaaa
gttaatgaagatacaaatttacatgaaagcaatattgaaaataaagaaaagacacccatt
aaaaataaagaggatgttaaaaagaaaaccagacctgataaaacagatcaaaaaaaggat
aataaagaacatgaaccaaagaataaaaaacattctaataatatttcagacgaggacatt
aagcataagggttctgaaaatagtaacaaatttaaacatacaaagaaatgttctaaaact
tcatctgctatttctaagatggaagtagaatatctgaaagaaaaaaaggaaacttctccc
aaaaagatagacacttttgatgtatatgaggaaaagattgagaagaaaaaacaaaatgct
gcaatgtatcagcaatatcttcaaagaggaggagccagaaatccaggctcaaaagaaatc
cctgttggtgctgagcagtgcctaacaggattaagttttgtaataactggcgttttggat
tctttagaaagagaggaagctgaagaacttattaaacaatatggtggacgaattttacac
caaatttcaaagaagactgactatgttatagtaggtgaccaagctggtcctgcaaaactg
tcaaaagctaccaccttaaacataaaaaaaatatcagaagatgatttgcttgagctgata
cgtacaaggcctgcaggtcaaagtgataatgcaacacaaccttgtgcaaaatcaaaagaa
agatcaaagagaaaatctgcagaatctagcgaagagtcaacaccaaagaagaaaaaaatt
actgtaaacgaggaaactaaaaaagcagcaaaagtgcattcaccacataaaagcgaaagt
agtaaaaaagaaattgaggactcattaaagcaagaactttataataaggatgaaaaaata
aaatcttcaattgaaaagaaacagaataaacataaagaatcacttgtacaggataaaaaa
gagataattgatgtgaaagatataaaaatacaaacaaatactttgcaagatataaatggg
aatacaccagtgcaggcattggttgaaaaatataggccaaaaactatgaaacaaatttta
gggcaacaaggggacaaaagtaatgctaagaaaatatacacttggttaatgaattggcat
aaaaatcaaagtggtcaagtgaaacatacaagacctagtccttgggcaaaggatgatagt
ggagcttttttcaaagctgctttattatctggtcctcctggaattgggaaaaccacgact
gtccaagttgtctgtaatgaattaggttttgatcttatagaatttaatgcatcagataca
agaagcaaaaaacttctgcaggaggaagtatcagaacttttatctaataccacaataaaa
aattattttaaagatgttaaaagcaaaccatcatcgaaacatgtattgttaatggatgaa
gtagatggaatggctggtaacgaggatcgcggtggtctacaggaattaattaatttgatc
aaatcaactgatatacctattgtttgtatttgcaatgatcgaaataatcctaaaatgaga
acgctttctaattatacatttgaccttcgatttccaaaacctagattggaacaaattagg
ggtgcgatgaaatctatgtgttttaaagaaaatattcaaatttcgaatgaagatctcgat
cgtttaattgaatcaactaatcaggatattcgtcaagttataaatcatttggcattattt
gttggacaaactggttctcaggaaaaaagtgaaaagaaacatataaataaggatttgaga
ctaggtccttgggatgttgtaaaaaaagtattttccatagaagaacataaacatatgagt
ataagtgacaaaagtaacttatttttccatgattacaatatagcaccattatttgtacaa
gaaaattacttgatggttatacctcaagtgccaaaaagtgaattgttaggaagggtagca
gaaagtgctgaaagtatagcattaggagatgtagttgaaaaatccataagaagtaataat
gcttggtctcttttaccaatacaagcttattattcttctgtaatacctggaacagcaatg
tctggtcacattggtggccaaattaattttccagcttggcttggacgtaattcaaaaact
ggtaaacttaatcgtttaatgcaggaaattacttcacatgcacgtttggctacgggtgcg
agtaaggaggctataaacttggactacattagacctcttagaaatactattctcagacct
ttagcagttggaggtattgaaaatgtagatgcagcaattgatgttatgaaccagtatcat
ttactcagggaagatctagattcattggtagaaatttctctatggcctggtgatcgtgat
ccgtttcaaattatagatagtaaggtgaaagctgcttttacaagagcatataataaaaat
tccgtggctctaccttatatagtgagtggaacatcaaagaaaaaagtaacatcaagtata
caagaaggtttcttagaagaggaggaagaagaaattgactctgatcaaaatgacgataac
attgatgcagataagatgattaaggcaaagaaagctggtacaaacaagaatactgaatca
aagggtaaaaatgctgataaaactgagaagaaaggcaaaaatagtagtgataagtctaat
aaacgtggaagaggacaggggaaagcaaaataa
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