Bombus pyrosoma: 122567020
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Entry
122567020 CDS
T07776
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
bpyo
Bombus pyrosoma
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpyo03041
]
122567020
03016 Transfer RNA biogenesis [BR:
bpyo03016
]
122567020
Enzymes [BR:
bpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122567020
Spliceosome [BR:
bpyo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122567020
Transfer RNA biogenesis [BR:
bpyo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122567020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122567020
NCBI-ProteinID:
XP_043581017
LinkDB
All DBs
Position
LG4:1738527..1741897
Genome browser
AA seq
733 aa
AA seq
DB search
MTAFEEMGVLPEIAKAVDEMEWTLPTDVQAEAVPLILGGGDVLMAAETGSGKTGAFCLPV
LQIVWETFKDLESGKTGKTSSNNGHQQHSSHWLLSLFDRGRALAVTPDGLRCQSREQKEW
HGCRANKGIHGKDKYFFEAIVTDEGLCRVGWSTSQASLDLGTDKFGFGYGGTGKKSNAKQ
FDNYGKAFGMHDVVGCLLNLSKGEISFTLNGVDLGPAFTLNAQQKSQTFYPAVVLKNAEM
SFNFGAQPFKYPPPNDYIAVASAPKEVINENPINSSQTHKENGKPKCNAPQAIIMEPSRE
LAEQTYNQIQKFKKHLKDPVIRELLVIGGVSVKEQIATLNSGVDIVVGTPGRLEDLIQGG
YLSLTHCRFFILDEADGLLKQGYTELIDRLHRQIPKITSDGKRLQMIVCSATLHAFEVKK
MAERLMHFPTWVDLKGEDAVPETVHHVVVIIDPQKDKSWHNLRKHIETDGIHSRDNIRPG
NNNPETLSEAVKILKGEYCIRAIKEHNMDRAIIFCRTKLDCDNLERYLKQSGGNQFSCVC
LHGDRKPAERKSNLEKFKRQEVKFLICTDVAARGLDISGLPFMINMTLPDEKSNYVHRIG
RVGRAERMGLAISLVSKVPEKVWYHGEWCPSRGRNCYNTNLTDKGGCCIWYNEPNYLAEI
EDHLNVTIQQVDADIKVPLNDFDGKVVYGEKKAAMGSNYQNHVQQMAPYVNELSSLESKT
QLLYLKRHMIKTS
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacggcattcgaagaaatgggtgttttacccgaaattgcgaaagcagttgacgaaatg
gagtggacattgccaactgatgttcaagctgaggcagttccactaattttgggtggtgga
gatgtgttaatggctgcagaaactggcagtggaaaaactggcgccttttgtctaccagtt
ttgcaaattgtctgggaaacttttaaggatctagagtctggtaaaacgggcaagacctcg
agcaataatggacatcagcaacattcttcacattggttgttaagtttatttgatagaggt
agagcattagctgtgactccggatggtttgcgatgccagagtcgtgaacagaaagaatgg
catggctgtagagcaaacaaaggaattcatggaaaagacaaatacttctttgaagctata
gtaactgatgaaggattatgtcgtgtaggctggtctacatctcaagcttcactggattta
ggaacagataaatttggttttggatatggtggtactggcaaaaaatcaaatgcaaaacaa
tttgacaattatggaaaggcttttggaatgcatgatgttgttggatgtcttctgaattta
tcaaagggtgaaattagctttacattgaatggtgtggatctgggtccagcatttactctg
aatgcacaacaaaaatcacagactttttacccagctgtagtattgaaaaatgcagaaatg
tcattcaattttggagcacagccatttaagtatccccctccaaatgattatatagctgtt
gcttcagctcctaaggaagttataaatgagaatcctataaacagtagccaaactcataag
gaaaatggcaagcctaaatgcaatgcccctcaagctataatcatggaaccttcgagagaa
cttgctgaacaaacatataatcaaattcaaaaatttaaaaaacatttgaaagatccagtc
attagagaattgttagttattggaggagttagcgtaaaagaacaaattgctacattaaat
tctggtgtggatatagtagttggaacaccaggccgtttagaagatttaatacaaggtggc
tacttgtccttaacacattgcaggtttttcattttggatgaagccgatggtttattgaaa
caaggctacacggaattaatcgatcgtttgcacagacagataccaaaaattacatcagat
gggaaaagattacaaatgatcgtttgttctgccacactgcatgcatttgaagttaaaaaa
atggcggaacgtttgatgcactttccaacgtgggtagacttgaaaggtgaagatgcagtt
cccgaaacagtacaccatgttgttgtaataatcgatccacagaaagataaatcttggcat
aacttaaggaaacatatagaaactgacggtattcatagcagggataacataagacctgga
aataacaatcctgagacactctcagaggctgtgaaaatactaaaaggtgaatactgtatt
cgtgccattaaagaacacaacatggacagagctataattttctgtagaactaaattagac
tgcgataacttggaacgatatttgaaacaatctggtggaaaccaattttcatgcgtatgt
ctccatggtgatagaaagcctgcggaacgcaaatctaatttagagaagttcaaaaggcag
gaagtaaagttcttgatttgtaccgatgtcgcagctagaggtttagatatttcgggatta
ccttttatgattaatatgaccctacctgacgagaaatccaactacgtacatcgcataggt
agagtcggtagagctgaacgaatgggtctagcaatttcattagttagtaaagttcctgaa
aaagtatggtatcacggcgaatggtgtccttctcgtggaagaaactgttacaatactaat
cttactgataagggtggttgttgcatttggtacaacgaaccgaactacttggctgaaatt
gaggatcatttaaatgtcacgattcaacaagtcgatgcagatataaaagttccattaaat
gatttcgatgggaaagttgtatacggagaaaagaaagcagccatgggttcgaattaccaa
aatcatgtacagcaaatggcgccctacgtgaacgaattatcttctttggaatcaaaaaca
caacttttatatttgaagaggcatatgataaaaacgagctaa
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