Bombus pyrosoma: 122567317
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Entry
122567317 CDS
T07776
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13191
RNA-binding protein 16
Organism
bpyo
Bombus pyrosoma
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyo03021
]
122567317
03041 Spliceosome [BR:
bpyo03041
]
122567317
Transcription machinery [BR:
bpyo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122567317
Spliceosome [BR:
bpyo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122567317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122567317
NCBI-ProteinID:
XP_043581622
LinkDB
All DBs
Position
LG5:complement(482500..495695)
Genome browser
AA seq
1489 aa
AA seq
DB search
MEAVKAFNAELSALYDVKPPISKAKMNSLTRGAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGVEKDVFAPRFAKNMQTTFLNLLKCPQEDKSKVIRVLNLWQKN
AVFPSEVIQPLFDLADPNHPIHKEQAVNTNGTLNASATNNVSNTVTSVKTPPLTAKNAVK
DQKLFSSAKPIDPAWLAQTKIETANIVNANKLLGQSNSAQMDVSFLDQLQHLQQLLLKKQ
ESANEQKSSVKFDKKLLDFDYGEEEDDDVVVASSPAATAGSNTGQHNTVSTGNSLESLGL
LLTNPEVLRQLQTLQQTMQGSTSSSQHETEEKMRKLQQMKQQEEEFDKHLAQTVPNLPFA
SECELKPSDILKPSQQNTYTTNVSSGVIQDMSQPPPGYPPALPYASQPLSNIRQINQQAH
QNQKSPLLDERQDTQDYSGNGARRDSSSVEIVNCENTRSQSRSPDRYRHHSRSRSPRHRD
RDRDRDRDRDRDRDRDRDRKSRSRSRSRRRRSRSRDRGRDRKREDSREKMTEEEREKERE
RRKRGLPPIVRDKLSVCSTTLWVGHLSKLVHQEELSDTFGEFGDIVSIDLISPRGCAFIC
MNRRQDAYRALTKLKNHKMQGKAITLAWAPGKGVKGKEWKDYWEVELGVSYIPWNKLVNV
TDQDLELLEEGGMIDEDTLPPNLKGKLKHSATNADVLQQQLQLQQQALVAAAGIPNLTDG
IVNVMQPSTSAQQQQSQQQTSQQGQQQQQVIDTSQPPPIRPPTSAALLPPPNTQLQMMPP
AFTMPGVPRMIGPMGLPMAHSLMPNVPIGVPPPNMQSLLGPPGMMQTMLTPPVNSPFGAG
VGVGLLTQIPLPAPAAPSDKPNSTGMPHNVPPIGVPPPTTETGMPNLPMLRQPYGVGPSA
PLQMQLPQQQHSADDMDVEMEDAMPQSSNGAKNKSNLTEQQLSQNEERAESDQQVEQHRD
YKERERDRENRERRDRETHLSHRDREGTDSRMDRGRDRGRGRDRGRDRRRDLRDRDRDDR
RERENRENREGNPQTQTLQENETTPKKDGKPSLADRLRQLADGTLPLEDRVDRIIPRNRQ
ERDRSDRNFDDSRSARGEPLSSLMDLPKFGLPQERGDFPARPPDFRNPQDPREYQQQRDR
QSFGRGHRGSQIHEEFMDVPRLQGGIYQEEFDNRIHGQQRVEEFGRLGSLREQREEFDRS
EVRGRRPLDDRDRFDYEIRRDGFDPRLQDGFDPRGHLDRGDFEPRRREFFGIDPIFGMPP
IMGPRGPRPGHPDGFGPRPAPLGARGPGPLMFHPRGLGPRPLRPGMRPFGPRGPPFDPRE
PDAFFRPPFDDIRPHVRPPFGPMGPPSIIPPESAAPWRNQELPPGSWPSDSENHSQRDNL
RDKKGGNKHPNNMERENRNRGRKSRWTNVSPSGEEIEESKEQESTSANVEGKQEPAKEEE
VAVKEEVKEEIDMKEVISNEQKEELVETVETKEEGVEMKKEEEEDCRDS
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggttaaggcatttaacgcagagctctcagctctgtatgatgttaaaccacca
atttcgaaagctaagatgaattctttaactagaggtgcaattaaggcaattaaattctat
aaacatgttgtgcaaagtgtcgagaaattcatccaaaaatgtaagccagagtacaaagta
cctggattgtacgttatagattcaattgtacgtcagtccagacaccaatttggggtagag
aaagatgtctttgctccacgctttgccaagaacatgcagactactttcttaaatcttttg
aagtgccctcaggaagataaaagcaaagtaataagagttttaaatctttggcagaagaat
gcagtgttcccttcggaggttatacagcccttatttgatcttgcggatccaaatcatcca
atacataaggagcaagcagttaataccaatggtacactgaatgcgtctgcaacaaataat
gttagtaatactgtaacttctgtaaagactcctcctttgactgcaaaaaatgcggtaaag
gatcaaaaattattttcttccgcaaagccaatcgatcctgcttggcttgcacaaacaaaa
atagaaacagcaaatatagttaatgctaataaacttttagggcaatcaaattcagctcaa
atggatgtttctttccttgatcagttacaacatttacagcagttattattaaaaaagcag
gagtccgcaaatgaacagaaaagttctgtaaaatttgataaaaagctcttagattttgat
tatggtgaggaagaggatgatgatgttgttgttgctagttcaccagcagcaactgcagga
tctaatactggtcaacacaatacagtttcaacaggaaatagtttggagagtcttggactt
cttttaacaaatcctgaggttttgagacaacttcaaacattacaacaaacaatgcaggga
agtacttcttcatcacagcatgaaacagaagaaaagatgcggaaacttcagcaaatgaag
cagcaagaggaagaatttgataaacatctagctcaaactgttcctaatttaccatttgca
tctgaatgtgaattaaaaccatcagatattttgaaaccaagtcaacaaaatacttataca
acaaatgtaagtagcggagtcatacaagatatgagtcaaccacctcctggttatccaccg
gctctaccgtatgcctctcaacctttatcaaatattaggcagataaatcagcaagcacat
caaaatcaaaagagtccacttcttgatgaacggcaggacacgcaagattattctggaaat
ggtgcaaggagagatagtagcagtgtagaaattgtaaattgtgaaaatacaagatcacag
agtagatcgcctgatcgatacagacatcacagtcgatctagatcaccacgacacagagat
agggatagagatagagatagggatagggacagggatcgagatcgagacagagatagaaaa
tctcgatcaagaagcagatctaggaggagaagatctcgttcaagagacagaggtcgtgac
agaaaacgggaggatagtcgagaaaaaatgactgaggaagaacgagaaaaagaaagagaa
aggcgtaaacgaggattaccaccaattgtgagagataaattaagcgtttgtagtacaact
ctttgggtgggacatctatcgaaattagtacatcaagaagaactttcagatacttttgga
gaatttggtgatattgtcagtatagatttaatttcacccagaggttgcgcctttatatgc
atgaatagaaggcaagatgcatatagggctcttactaagcttaaaaatcataaaatgcaa
ggaaaggcaatcactttagcttgggctccaggaaaaggagtaaaaggaaaagaatggaaa
gattattgggaagtcgaattaggagttagttatattccttggaataaattagttaatgtt
actgatcaagatttagaattattagaagaaggaggtatgattgacgaagacactctaccg
cccaatctaaaaggtaaattaaagcattccgcaacaaatgcagatgtacttcaacaacag
ttgcaattgcaacagcaagcattagttgcagctgctggaattccaaatttgacggatggt
attgtaaatgtaatgcaaccttcaactagtgctcaacagcaacaatcccagcaacaaact
tcacaacaaggtcaacagcagcaacaagtaatcgatacaagtcaacctccaccaattaga
ccccctacatcagctgctcttttaccgccaccaaatacacaattacagatgatgccacct
gcttttacaatgccgggagttcctcgtatgattggaccaatgggattaccaatggcacat
agtttaatgccgaatgttcccataggtgtgccacctccaaatatgcaaagtttattaggg
ccaccgggaatgatgcaaactatgttaacgccacctgtaaattctccatttggagcaggt
gttggcgtcggcttattaactcaaattcctttaccagctccagctgcaccttctgataaa
cctaattctactggtatgccacataatgttcctccaataggagttcctccgccaacaaca
gaaacaggtatgccaaatttaccaatgttacgccaaccatatggtgtaggcccttctgca
cctttgcaaatgcaactacctcaacaacaacattctgctgatgacatggatgtagagatg
gaagatgcaatgccacaaagttcaaatggagcaaaaaataaaagtaatttaactgaacaa
caactttcacaaaatgaagaacgagcagaatctgatcaacaagtagagcagcatcgagat
tataaagaaagagaaagagatcgtgaaaatagggaaagaagagacagagagacgcattta
tctcacagagatagggaaggtactgattctagaatggatcgcggaagagaccgaggtaga
gggagagataggggacgcgatcgtagaagagatcttagagatagagacagggatgacaga
agagaaagggaaaaccgggaaaatcgagaaggaaatccacaaactcaaactcttcaggaa
aacgaaactaccccaaaaaaagatgggaaaccaagcttagctgatcgtttgcgtcaattg
gctgatggcacactgccacttgaagatcgtgtcgatcgaataatacctcgtaatcgccag
gaacgagatagatccgacagaaattttgatgattctcgatcggctcgtggagaacccctt
tcttctttaatggatttgccaaagtttggtttacctcaagaaagaggtgattttccagct
cgaccaccagattttcgtaatccgcaagatccgagagaatatcagcagcaaagagataga
caaagtttcggaagaggtcatagaggatcacagatacacgaggaatttatggatgttcca
aggttgcaaggaggaatatatcaagaggaatttgataatagaatacatggacaacaaaga
gtagaagaatttggaagacttggatcacttagagaacaaagggaggaatttgataggtct
gaagtacgaggaaggagaccactcgatgatcgggatcggttcgattatgaaattaggcga
gatggttttgatccacggcttcaagatggtttcgatccaaggggacacctcgaccggggt
gattttgaacctagaaggcgagaattctttggaattgatcctatttttgggatgccgcca
ataatgggacctagaggacctagacctggacatcctgatgggtttggaccacggccagct
cccttaggagctcgtggaccaggtccattaatgttccatccacgaggtttgggacctcgt
cctcttcgtcctggtatgaggccttttggccctcgtgggccaccttttgatccccgagag
ccggatgcctttttcagaccaccttttgatgatattcgtccccatgtcagaccacctttc
ggtcctatgggtccgccatccattattcctccagagtctgctgctccctggagaaatcag
gaacttccgcctggttcctggccttccgattcagagaatcactcacaaagggataatctt
agagacaaaaaaggtggtaataaacatccgaataacatggaaagagaaaatcgaaatagg
ggacgaaaatctagatggactaatgttagtccatctggagaggaaattgaagaatcaaaa
gaacaagaatcaacctctgcgaatgttgaaggaaaacaagaacctgcaaaggaagaagaa
gtagctgtgaaagaagaagtgaaagaagaaattgatatgaaggaagtaatctctaatgaa
cagaaggaagaattagtagaaacggttgagacaaaagaagaaggcgttgaaatgaagaag
gaggaagaagaggattgcagggattcttag
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integrated database retrieval system
