Bombus pyrosoma: 122567934
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Entry
122567934 CDS
T07776
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03008
Ribosome biogenesis in eukaryotes
bpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122567934
09123 Folding, sorting and degradation
03018 RNA degradation
122567934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyo03021
]
122567934
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122567934
03009 Ribosome biogenesis [BR:
bpyo03009
]
122567934
03016 Transfer RNA biogenesis [BR:
bpyo03016
]
122567934
Transcription machinery [BR:
bpyo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122567934
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122567934
Ribosome biogenesis [BR:
bpyo03009
]
Eukaryotic type
Pre-60S particles
RNases
122567934
Transfer RNA biogenesis [BR:
bpyo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122567934
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
122567934
NCBI-ProteinID:
XP_043583043
LinkDB
All DBs
Position
LG5:complement(958610..990866)
Genome browser
AA seq
946 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVECIEQKPITTNGVRVPVNSADPNPNGIEFDNLYLDMNGIIH
PCTHPEDKPAPKNEEEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKEASEKVNEIKRIRSELTLKGASLPPEKPKEDHFDSNCITPGTPFMARLSKCLHYYIH
DRLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRKQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQLGHEMQECTGAEVNQGDETNTFGSECQYIFV
RLNVLREYLERELQMPNLPFKYDFERVIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
NLYKKAVYKTGGFLTDSGDVNLDRVQLIMSELGDVEDEIFKKRQQNELAFKQREKDKRKL
SLGISNNKPKWIPTGQFAPTRIGEHVSPVQNARYEAYQMRVCGQNYHTSAKSSQEMLESM
MRPENSINQAMKRKRELVENDSDDDQVHDEVRLWEDGFKDRYYESKFDVSPDNLAFRNNV
ALQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGGLSTEFEKGTTPFRPLEQL
MGVFPAASSKHIPAPWAKLMINPRSPIIDFYPEDFKIDLNGKKFAWQGIALLPFVDEKRL
FKALEPYYDCLTEAEKKRNVEGDNRLYVGLGNSGYNFIKGLYTNHVLFDAETQICIDNMR
GTVLLADDCVGDGATLPSPINGLPVRNNKVYCARFRDPKYSSSFIFPARKLKGVREPPRV
LKPQDFDQMNRNTGNTWKPQIGFTPSTQVATLNDAGRRILRHYTNHNGVPPPYNPVSIQQ
SLYPAHHGYRSTDYQGRYESAGSSQFAMMPGPWARGYGTPHNYQQYSEYQQRNNYGAQQY
GRNNYHNPQYNSYGSQYNQQRNYSSNYQGNSGGSGANRGGGWGRSM
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcattttttcgatggttgagtcggaagtatccttctataatagtagaa
tgtatcgagcaaaagccgataactacgaatggtgtacgtgtacctgtgaattcggcagat
cctaatccaaacggaatagaatttgacaacttgtaccttgacatgaatggtattatacat
ccttgtactcatccagaagataagccagcaccaaaaaatgaagaagaaatgatggaagcc
atttttgaatgcattgatcgcttatttcgtattgtgagaccaagaaaattactttacatg
gcaattgatggagttgcacccagagcaaaaatgaaccaacagagatcaagacgatttaga
gcttcaaaagaagcaagtgaaaaagttaacgaaataaagagaatacgttctgaattaaca
ctcaaaggggcgtccttgccaccagaaaaaccaaaagaagatcattttgatagcaattgt
attacgccgggcacgccatttatggcaagattgtcaaagtgtttgcattactacatacac
gatcgtttaaacaatgatcctggttggagaaatataaaagtaattttaagtgatgcgaat
gtaccaggtgaaggagaacataaaataatggattttatacgcaaacaaagagcacaacca
gatcatgatcccaatacacaacacgttttatgtggagccgatgctgatttaattatgtta
ggacttgcaacacacgaacctaattttactattattcgtgaagaatttaagccaaataag
ccgaaaccatgcgatatatgtggtcaattaggacatgaaatgcaggagtgtacaggtgca
gaggttaatcaaggagacgaaacaaatacttttgggtctgaatgccagtatatatttgtg
cggttaaatgtcctcagagaatacttagaaagagagttgcaaatgcctaatctaccattt
aaatacgatttcgagcgagttatcgatgattgggtgttcatgtgtttcttcgtaggaaac
gattttcttccgcatcttccatctttggagattagagaaggggcaattgatagactcgtt
aatttgtataaaaaagctgtatataaaacaggaggatttttgacagatagtggagatgta
aatttagacagagttcaacttataatgtctgagctgggcgatgttgaagacgaaattttc
aagaaaagacaacagaatgaattagccttcaagcaacgtgaaaaagataaaaggaaacta
tcgctgggaatcagtaataataaaccaaagtggattcctacgggtcaatttgcaccaact
cgtattggtgaacatgtgagtccagtacaaaacgcacgttatgaagcttatcagatgcgt
gtttgtggtcaaaattatcatacaagtgcaaaaagttctcaggagatgttagaaagtatg
atgcgtcctgagaattcgattaatcaagcaatgaaacgtaaaagagagttagttgaaaat
gactcggacgacgatcaagtacacgatgaagttagattgtgggaggatggctttaaagat
cgttattacgaatcgaaattcgacgtgtctcctgataatttagcatttaggaataacgta
gcgttgcagtatgtgcgcggtttatgttgggttttacgatattactatcaaggttgtgct
tcgtggaaatggtattttccgtatcattacgcaccattcgctagcgatttcatcaatatc
ggtggtctttctaccgaatttgagaaaggaactacaccattccgtccattagagcaattg
atgggtgtatttccagcagctagcagtaaacatatccctgctccgtgggcaaaattaatg
atcaatccaagatcgccaattatcgacttctatccggaagattttaagattgatttaaac
ggtaaaaaatttgcttggcaaggaatagctctacttccttttgtggacgagaaacgattg
ttcaaggcattggagccttattacgattgcttaacagaagcagaaaagaaacgaaacgtt
gaaggagacaaccggctatacgtaggacttggcaatagtggttataattttataaaggga
ctttatacgaatcacgtactattcgacgcagaaactcaaatatgcatagacaacatgcga
ggtacggttttattagcagacgattgcgtcggagatggggctactttaccttcacccata
aacggtctaccagtcaggaataataaagtatattgtgccagattcagagatccaaaatat
agtagtagtttcatttttcctgcgaggaagttgaagggtgtcagagaaccaccaagagtt
ttgaaacctcaagactttgatcaaatgaatcgtaatactggaaacacttggaaaccacaa
attggtttcactccttccacacaagtagctacattgaacgatgcaggtcgaagaatactt
agacattacacgaaccacaatggagtgccaccaccatacaatcccgtatcgatacaacag
tcgctatatccagcacatcacggttaccggagtacagactatcaaggaagatacgagagt
gctggatccagccagtttgcaatgatgcctggtccatgggcgaggggttacggcacgccc
cataattatcagcagtattcggagtaccagcaaagaaataattacggcgcccaacagtac
gggcgaaacaattaccacaatccacagtacaacagttatggctcgcagtacaatcagcaa
cggaattattcttctaactaccaagggaatagtggtggaagtggggcaaacaggggagga
gggtggggacgatcgatgtag
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