Bombus pyrosoma: 122568453
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Entry
122568453 CDS
T07776
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bpyo
Bombus pyrosoma
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpyo03041
]
122568453
Enzymes [BR:
bpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122568453
Spliceosome [BR:
bpyo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122568453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
nSTAND3
Ank_2
HA2_N
Ank
AAA_22
AAA_19
Ank_5
ATPase
PhoH
Flavi_DEAD
Cas_TM1802
T2SSE
Ank_4
Ank_3
NACHT
Motif
Other DBs
NCBI-GeneID:
122568453
NCBI-ProteinID:
XP_043584132
LinkDB
All DBs
Position
LG6:complement(16817078..16822496)
Genome browser
AA seq
1157 aa
AA seq
DB search
MPRRNRSKKAPLIGEDTRIAVNLTLKKLLETHDQKELEFPSSYTAEERAYIHKLAHELGL
KSKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKASRQSIYNLLQAFPLNHKECQDLLPP
IERERPPNTDVSVNTNTKAMGRLNNSVPQIPQLKTNFDVLNYRKALPIFSFREDILDALN
TNQVVIIGGETGSGKTTQVPQFILEHCQQRQQPCRIICTQPRRLSAVSVAERVAFERDEK
IGQTFGYQIRLESRVAPKTLLTYCTNGVLLRTLMAGDSALSTVTHVIMDEVHERDRFCDF
LLIALKDAIQKHKSLKLVLMSATLDVNIFVKYFNKCAVVNVLGRSYDVDTYFLEDVLKMT
GYMTKEMLSKRKEFMNKKDQHKVLETWTQYKPQQSGSNTMSERCILPAPILAQQNEPVPE
KIKLEPWLAEEMDKSISEAWLRGGEDNFAQLLYFILSENVSVDYQHSTTFVTPLMIAAGK
GCINTTEQLLNLGANLNLRAANEWTALDWAKNMNQAECAELIEAYMKTYDCTLQDETKVH
AKDVSLSEEDKFLLDVYQHTFNDDKINYDLLLQLILHIHLKMPPGSLLVFLPGYDDIVTM
REKINNEEKEMNKGLRYNLYVLHSNMQTCDQKKVFKPSPVGSRKIILSTNIAETSITIDD
VVYVIDSGKVKEKSFDALSGVCTLKSNWISQACAKQRKGRAGRCRKGICYRLFSTVRYNS
MEPYQTPEILRSPLQELCLYTKHLAPGNTPIAEFLDRALEPPSNVITRNAVQLLKTIDAL
DPWEDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPVLTIVCSLAYKDPFILPLQPSQK
RAATAARKRFATNTYSDHMAVLRAFQGWQNARASGKERTFCEQNFISAAVMEMVVGMRTQ
LLGQLRASGFVRARGPGDIRDLNSNSENWAVVKAALTAGLYPNLIRLDREHLQLRTQKEV
KVSFHPSSTLRDYPKSPRMTSSQTYAANVEALPCDWLLYEEMSRTGRFCHVKMVTLINPL
TVALFCGPARLSVDVIYEAESVPESESDSEVDESNEGTIFKLDDWIVFKLDPETARFFLH
LRQKWNALFLRRMKTPNKAMSQLDEKVVSTLVSVITNEEQTCGLQQPSGIGQRPRPLIVD
YYPANVRRTDDFVERNF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcagaaaccgcagtaagaaagcccctcttattggggaggatactagaattgca
gtaaatttaacacttaaaaagttattggaaactcatgatcagaaagaattagaatttcca
tcttcgtatactgcggaagaaagagcctatattcataaattagcgcatgaacttggatta
aaatctaaaagtagaggtaaaggtacaaatcgttttttaactgtatacaaaagagaagga
tcgacaatagtccaagctgatgctgtaataaaattgcaaaaagcatctagacaaagtata
tataatttattacaggcttttccactaaaccataaagaatgtcaggatttgttaccaccg
attgaacgagaacggcctcctaatacggatgtttcagtaaatacaaatacaaaggcaatg
ggtcgattaaataacagcgtgcctcaaataccacaattgaaaactaattttgatgtatta
aattatcgtaaagcactcccaatatttagcttccgggaagatatccttgatgcattaaat
accaatcaggtagtcataataggaggggaaacaggtagtggtaaaactactcaagttcct
caatttattcttgaacattgccaacaaaggcaacaaccttgtagaattatttgcactcaa
ccaaggagattgtcagctgtgtcagtggctgaaagagtagcatttgaaagagatgagaaa
attggtcaaacgttcggttatcaaataaggcttgaaagtagagttgccccaaaaactctt
ttaacatactgtacaaatggtgttctccttagaactcttatggcaggagattctgcttta
agtactgttacacatgttatcatggatgaagttcacgaacgcgataggttttgcgatttt
cttttaatagcattaaaagatgcaatacaaaagcataaatctcttaaacttgtgcttatg
agcgccacattggatgttaacatttttgttaaatattttaacaaatgtgcagttgtaaat
gtcttgggaagatcatatgatgttgatacgtattttctcgaagatgttctaaaaatgacg
ggttatatgacgaaagaaatgctttcaaaaagaaaagagtttatgaataaaaaagatcaa
cataaagtgttagaaacttggactcaatataaacctcaacaatcaggatcaaatactatg
agtgaaagatgtatattgcctgctccaattttagcacaacagaatgagccagttcctgaa
aaaataaaattagaaccatggctagccgaagaaatggataaaagtatttctgaagcatgg
ttacgtggaggcgaagataattttgcacaacttttatatttcatactttccgaaaatgtt
tcggtagattatcaacattccacgacattcgtgactccacttatgattgccgcaggaaaa
ggatgtataaataccacagaacagcttttaaatttaggtgcaaatttaaacctacgagca
gccaatgaatggactgcattagattgggcaaagaatatgaatcaagctgaatgtgccgag
ttaatagaagcatatatgaaaacttatgattgtacactacaggatgaaacaaaagtacat
gctaaagatgtttcactttcggaagaagataaatttttattagatgtatatcaacataca
tttaatgatgataaaatcaattatgatctcctcttacaattaattttacatatccactta
aagatgcctcctggttctcttttagtatttttaccaggatatgatgatattgtaactatg
agagaaaagataaataatgaagaaaaggaaatgaataagggtttacgctataatttatat
gtacttcattcaaatatgcaaacatgtgatcaaaagaaagtatttaagccaagtcccgta
ggatctcggaaaatcattctttcaacaaatatcgctgaaacaagtatcacaattgatgat
gtcgtatatgttattgattcaggaaaagttaaagaaaaatcgttcgatgcattatcgggg
gtgtgtacacttaaatccaattggatttcccaagcttgtgcaaaacaacgtaaaggtaga
gcagggagatgtagaaaagggatttgttatcggctattttcgacggttcgatataatagc
atggagccttatcaaactccagaaatcttaagatcaccactacaagaactgtgtttgtac
acaaaacatttagctccaggaaatacacctatcgcagaatttttagatcgagcattggaa
ccaccttccaatgtaataacaagaaatgcagttcaattattgaagactatcgacgcatta
gatccgtgggaagatctcactgaattaggaagtcatttgcttgatttaccaattgaacca
agacttggaaaaatgttattgtatgctgtagttttaaaatgcttagatcctgtcttgact
attgtatgtagtttagcatacaaagatccctttatattacccctgcaaccatcacaaaag
agagctgcaactgcggctcgtaagagatttgcgactaatacatattccgatcatatggca
gttttacgtgctttccaagggtggcagaatgcacgtgcaagcggcaaagaacgcacattt
tgcgaacaaaattttatttcggctgctgtgatggagatggtagttggaatgcgtacacaa
ctgcttggtcagcttcgtgcatctggatttgttagagcaagagggccaggagatattaga
gacttgaattctaattctgaaaattgggccgtagtgaaagcagctctgactgctggttta
tatccgaacctaataagactagacagagagcatttgcaactaagaacacagaaagaagtg
aaagtatctttccatccatcatcaactttaagagattatccaaaatcaccaaggatgaca
tcctctcaaacatatgcagctaatgtagaagctttgccctgtgattggttactttatgaa
gaaatgagtcgtacaggacgattttgtcatgttaaaatggttactctgatcaatccatta
acagtagctttgttctgtggaccagcaagattgtccgtagacgtaatttatgaagctgag
tctgtaccagagagtgaatcagattctgaagttgatgaaagtaatgaaggaacgattttt
aaactcgacgattggatagtatttaaactcgatccagaaactgctaggttctttttacat
ttaagacaaaaatggaatgccttgttcttgagacggatgaaaacgccgaataaagcaatg
tcacaacttgacgaaaaggtagtgagcactttagtaagtgtaattacaaatgaagaacag
acatgtggattacaacaaccatctggtattgggcaaagaccacgccctttaattgttgat
tattatcctgccaatgttaggagaacagatgactttgtagagaggaatttttaa
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