Bombus pyrosoma: 122569472
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Entry
122569472 CDS
T07776
Name
(RefSeq) exosome complex component RRP42 isoform X1
KO
K12589
exosome complex component RRP42
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122569472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122569472
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122569472
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
122569472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
122569472
NCBI-ProteinID:
XP_043586499
LinkDB
All DBs
Position
LG1:4814560..4816642
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AA seq
291 aa
AA seq
DB search
MAETVLSSGEKTFILHGIDADFRNDGRRRCEYRSMEIETKLMPQTHGSARLRIGNTDILV
GIKIELDVPHADRSNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTAAYQTRNAFD
LRTLCILPHKKCWKIYVDILILQCGGNLFDAVGITVKAALNSTEIPKITAATLDGGEPDI
ELSDDAYDCIKLDTSNYPIIVTLCKIGDNYIVDPTSEEEVCSASSIVMSVLPNGKVSSVI
KLGYGSIQSNTFIKMLQMGKNIGLQLNESLMKALKKESQLGQRRQILGFLR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaactgttttaagttccggtgaaaagactttcattctccatggaatagatgca
gactttagaaatgatggtaggcgacgatgcgaatatcgatcaatggaaattgaaactaaa
ttaatgccacaaacacatggatctgcaagattacgcataggaaatacggatatacttgtt
ggcattaaaatagaacttgatgtacctcacgctgacagatcaaatgaaggaaaattagaa
ttttttgttgattgttctgctactgcaactccagcatttgaaggaaaaggtggtgatgat
ttagcaactgaaataagtaacattttaacagctgcttatcaaacgcgtaatgcttttgat
ttaaggacattatgtattttacctcataagaaatgttggaaaatatatgttgatattttg
attcttcagtgtggtggcaatctttttgatgcagtaggaattacagttaaggctgcatta
aatagtacagaaataccaaaaattacagctgcgactctggatggtggggaaccagatatt
gaattatcagatgatgcttatgactgcataaaattagataccagcaattatccaattatt
gttacactgtgcaaaattggtgataattacatcgtggatccaacctcggaagaagaagta
tgtagtgcaagtagtattgtcatgtctgtattaccaaatggtaaagtttcatcagtgatt
aagttgggttatgggagtattcagtctaatacttttatcaaaatgttgcaaatgggtaaa
aatataggattacaattaaatgaaagtcttatgaaagcactgaaaaaagaaagtcaactt
ggacaacgaagacaaatattaggatttcttagataa
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