Bombus pyrosoma: 122571132
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Entry
122571132 CDS
T07776
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03013
Nucleocytoplasmic transport
bpyo03015
mRNA surveillance pathway
bpyo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122571132
09122 Translation
03013 Nucleocytoplasmic transport
122571132
03015 mRNA surveillance pathway
122571132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122571132
03041 Spliceosome [BR:
bpyo03041
]
122571132
Enzymes [BR:
bpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122571132
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122571132
Spliceosome [BR:
bpyo03041
]
Complex C
Other components
EJC/TREX
122571132
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122571132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122571132
NCBI-ProteinID:
XP_043590423
LinkDB
All DBs
Position
LG9:complement(6603062..6608492)
Genome browser
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQLVDGSRDTPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIIDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgacctcttggattacgaagatgaagaacagactgaacaattagtt
gatggaagtagggatacacctgctaaaaaagaagtgaagggcacatatgtatccattcac
agtagtggatttagggattttcttcttaaaccagaaatattacgtgcaattattgattgt
ggttttgaacatccatctgaagtacaacatgaatgtattccccaagcagtacttggtatg
gatatattatgtcaagcaaaatctggcatgggaaaaacagctgtatttgtgttagctaca
ttacagcaattagaattaacagagaaccaggtctatgtccttgtcatgtgtcatacgcga
gaacttgctttccaaattagcaaagaatatgaacgatttagcaaatatatgcctcatgtg
aaggtcggtgtattttttggtggcttaccaattcaaaaagatgaagaagtcctaaagaac
gtatgtcctcacattgttgtgggtacaccaggtcgtatccttgctcttgttcgaaataaa
aaattaaatttgaaacacttgaagcactttatactcgatgaatgcgataaaatgctcgag
ctattagacatgcgcagggacgtacaggaaatatttagaagcactccacacggcaaacaa
gtcatgatgttcagcgctacattgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtggatgatgaagcgaaactcacgttgcacggtctacaa
caacattatgtgaaacttaaagagaatgaaaagaacaagaagctatttgaattacttgat
gtacttgaatttaatcaggtcgttatctttgtaaaatctgtacaaaggtgtatggctttg
gcacaacttctaacagaacaaaattttcctgcgattggtatacacaggggtatgactcag
gaagaacggctatcaaggtatcaacaatttaaagatttccaaaagcgtattttagtagct
acaaatttatttggacgtggtatggatattgagcgtgtaaacatagtgtttaattacgat
atgccagaagattcggacacatacctacatcgagtagccagagctggtcgtttcggtacc
aagggtcttgctattacattagtcagtgatgaaagtgatgctaagatactgaacgatgtt
caagaacgatttgatgttaatattacagagttaccagatgagatagatctagcttcatac
attgaaggacgataa
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