Bombus pyrosoma: 122572403
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Entry
122572403 CDS
T07776
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122572403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyo03021
]
122572403
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122572403
Transcription machinery [BR:
bpyo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122572403
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122572403
U7-dependent histone pre-mRNA processing factors
122572403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
122572403
NCBI-ProteinID:
XP_043593270
LinkDB
All DBs
Position
LG11:15547395..15552982
Genome browser
AA seq
1111 aa
AA seq
DB search
MDPRIHRRTEPEKGPGDLIVEWLNEASLNPGEDIKVANLCKVQEILINKEPQLLPLYLDE
ALQFSLDRNAEVRKTITGFIEEAGVKQPEIIPRVVQVLLRLVSDESSAVAKRALRASGRI
LRAALKWISSAITVTPEMEVAWNQLSALKIQIINMIDSDNDGIRTQAVKFLEGVVLIQTY
PDPDIPKKSDDFSLEDIPLTLKIARRRKLEEEANDVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKTRPQFMPGVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEFAS
TIAKQLTQLGAKEQEILKAYPKPEDIRRMKKRQQEAAASSAAKRVKIETSLIPDESEIVA
SLVPSSKVPELVELSESFIAERLSVDIVTDLVMDSMAWVPDTMTTIFQREYQPSSTTDIN
IQRQTIAKLLAAQIRQAKTKKKKDAKDEDAVMEDLVKNPTISVAEAKRERKREKDREKEK
EAKASLEAHEKSLAKARTRLKALKLSEVTKPLSKEIKERMLLMAVNRILLSEKTAVFGGV
AAIRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCT
KPQEAPHQAYNFLLCTLVSAIDLVQGKDRDTLLYRLYLEAPLITEDAVEALKMVSSDETR
GLMPLQLLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYSRPELSKLIEE
YAVLYLGFLRLHTPPEIVFGQDRGRPQVETQWTESTTRACLGLYLALLSEHQDLIHELAR
VYTSMGADVKRIVLRLVEGPVRSLGMGSPQLLSLVENCPKGAETLVTRIIHILTEKSAPS
VELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHN
NESGVPHTSPITPAELLIALHNIDPSKAELKTVIKATSLCFAEKQIYTQETVAVVMQHLM
EMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQS
FAVILQLPPAQLAEALKMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKSPCDIHDE
FDIAPPGDYPIEQKPDTMETDISEPAPPGLD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcgaatacatagaagaacagagccggaaaaaggaccgggcgatttgatagtt
gaatggttaaatgaggcttcactaaacccaggagaagatataaaagttgcaaatttatgt
aaagttcaggaaatattaataaacaaggagccacaattacttccattatatttggatgaa
gcattacagttttccttagataggaatgcagaagttaggaaaacaattacaggtttcata
gaagaggctggtgtaaaacaacctgagataattccacgtgtagttcaggtacttttaaga
ctagtttctgatgaatcatcggctgttgctaaaagagctcttagagctagtggcagaata
ttaagagctgcattgaaatggatatccagcgccattacagttacgccagaaatggaagtt
gcatggaatcaacttagtgctctcaaaattcaaattataaatatgattgacagtgacaat
gatgggattagaacacaagctgtgaaatttcttgaaggtgttgttttgatacaaacatac
cctgacccagatataccaaaaaagtcggatgatttttctttagaagatattccattaaca
ttaaaaatagcacgcagacgcaaattagaggaagaagctaatgatgtaatggacttatta
atcaaatttcatgggtctccacacgttagtagcgttaatttgatgacatgcatgggatct
ttagcattgatcgctaaaacaagacctcagtttatgcctggtgtaatacaagctttgcaa
aggttacaacatgatttaccacccacgttatctgattctcaagtaactagtgttcaaaaa
caattaaaattaactctattaggactgatgaagcatccagctagcatagaatttgcatcc
acaatagctaaacaactgacccaattgggagcaaaagaacaagaaattcttaaagcttat
ccaaaaccagaagatattcgacgtatgaagaaacgacaacaagaagcagcagcgtcttcc
gctgcaaagcgtgttaaaatcgaaacttctttaataccagatgaatcagaaattgtggct
agtttagtacccagctcaaaagtaccagaattggttgaactttcagaaagttttattgct
gaaagattaagtgtagacattgttacagatttagtaatggatagcatggcgtgggtccca
gacacaatgacaacgatttttcaaagagaatatcagccttcttcaacgaccgatataaat
attcaacgacaaacgattgctaaattactagcggcacaaataagacaagctaaaacaaag
aaaaaaaaggatgcaaaggatgaagatgctgtgatggaagatttagtgaaaaatccaacc
atcagcgtagcggaagcaaaacgagagcggaaacgtgaaaaagatagggaaaaagaaaaa
gaagcaaaggcatctctggaagcacatgaaaaatcgcttgcgaaggcaagaactcgttta
aaagccttgaaattatccgaagttacaaaaccattatcaaaagaaattaaagaaagaatg
ttactgatggctgtgaatcgaattttactttctgagaagacagctgtatttggcggcgta
gcagccataagatcaaaaattttaactactctagcggcaacatttaatccatacattaaa
gaagcagtattacgttatattactgacgatatgagaaatcgtttagacttagctttaggt
tggttgtatgaagaatatgcattacttcagggtttccaaagacgaactacattatgtaca
aagccccaagaagctccgcatcaggcttacaattttttattatgtactttagtatctgca
atagatttagttcaaggcaaagatcgtgacacattactatataggctatacttggaagct
ccattaatcaccgaagatgcagttgaggctttgaaaatggtgtcttctgatgaaacaaga
ggactgatgccgttacaattattaaaagaaatggttattcgtagaccaacaaaacaatta
gttttcctaaacgtattgttatgtcatactggccatgaaaacaatacgataagggaagcc
gctatacagctagtttgtcaactatatagtcgtcctgaattaagtaaactcatagaggag
tatgcagttctctatttaggtttcttacgactacatacaccacctgagatcgtctttgga
caagatcgaggtagaccgcaagtagaaactcagtggactgagtcaactacaagagcttgt
cttggattatatcttgctctgttaagtgaacatcaagatttaattcatgaattggctaga
gtttatacatcgatgggtgcagacgtaaaacgtatcgttcttcgattagtagaagggcct
gtaagatctttaggaatggggagtccacaattgttgtcattagttgaaaattgccctaaa
ggcgctgaaacactagttacaagaattattcatatccttacagaaaaatctgcaccgagt
gtagaattagtagcaagagtacgtgaactttatcagaccagggtttcagatgttcgattc
ttaataccagttttaaatggtttaacgaagaaagaagttatagctgctcttccaaaactc
ataaaattaaatcctattgttgttaaagaggtattcaatagactgctaggcactcataat
aacgaaagtggcgtacctcatacatctcctatcacgcctgctgaattattaatagctttg
cataatatagatccaagcaaagcagaattgaaaacagttataaaagctacgtccctatgt
tttgcggaaaaacaaatatatacacaagaaactgtagctgttgtaatgcaacatcttatg
gagatgacccctcttcctacattactcatgcgtacagtgatacaaagtttagcattatat
cctaggttaagtggattcgttatgaatatacttcaacgattaattctcaaacaagtttgg
aaacagccaaaagtatgggagggttttgtaaaatgttgtgaacgtacgcaaccacaaagt
tttgcggttattttacaacttcctccagcacaattggccgaagcgttaaaaatggcgagt
aatttacgtgcaccattattagcgcatgtcgaagcctttgccgaaaatcagaaagcgcac
attccgcaatcaataatggatgttattcagggtaaatcaccttgcgacatacatgatgaa
tttgatattgcaccacccggtgattatccgatcgaacaaaaaccagatactatggaaact
gatatttcagaaccagctccgcctggtttagattag
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integrated database retrieval system
