Bombus pyrosoma: 122572712
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Entry
122572712 CDS
T07776
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bpyo
Bombus pyrosoma
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bpyo04147
]
122572712
00535 Proteoglycans [BR:
bpyo00535
]
122572712
00536 Glycosaminoglycan binding proteins [BR:
bpyo00536
]
122572712
Exosome [BR:
bpyo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122572712
Proteoglycans [BR:
bpyo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122572712
Glycosaminoglycan binding proteins [BR:
bpyo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122572712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
RH_dom
Motif
Other DBs
NCBI-GeneID:
122572712
NCBI-ProteinID:
XP_043593977
LinkDB
All DBs
Position
LG11:complement(3986322..4330612)
Genome browser
AA seq
1178 aa
AA seq
DB search
MRPRLQWLIFVLFCVTRVNADFFNEKKELEYDLLQASVALTDDNNLYIDDGLDGFPSFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLVYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVTLYLNCHEMAKQRVT
RIPLELMFDTASTLYIAQAGPHIQEKYDGLLQSLKLYSGHPADLVRCTADFNFNPDEDLG
SGDINNDLIDGLEDVDTNVPDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGEKGDKG
DKGESVRGPPGPPGPPGQDEGPPGKKGEPGTCTCNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGIAGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGSPGPKGETGIAG
AKGYKGEPGHKGAKGDHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTG
PEGKPGPAGAPGPPGLPGLSGSGGINVGEAMLREKGDKGESGARGYKGDKGTKGEKGDKG
DSGPAGIPGVNGIQGPQGNKGEPGKDGVPGAPGVVGAKGEKGERGPPGATAIASSGDYIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKTGAMGEIGLPGWANSMKGRPGTPGLPGPVGPV
GPKGEKGEPGTPSPYGVSVGIKGDKGDDGFPGIPGQPGRDGQRGPPGPPGPPGPPSQGNY
IPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGVRQVPKNIKDFKHNMFFG
TLQGPRTSLDELKALRELKQLKELKEHLGAATTATRGPLESTTKIVPGAVTFQNTEAMTK
MSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPVNPPFEASNL
INQIPVKADGTGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSS
RVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFA
WPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLC
IEVTSETTRRRRSVEISEDEDEMSENDYKEYLDSLMEN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagattgcagtggttgatattcgtcctgttctgtgtgacgcgcgtcaacgcg
gactttttcaacgagaaaaaagagctggaatatgatttacttcaagcttccgtggcatta
acagacgacaataatttgtacatcgacgatggtctcgacggatttccaagttttggcttc
cgacctggctccgaagttaaacagccgtatcgattatatttgccggaaaaattgccagca
gagttcactttggtagcaacttttaagccgacgtcatttagaaccagctatctcttcgcc
gtcctaaatcccttcgaaactgttgtgcaattaggcatccggatatccgatggtccagga
acaaaccagaatgtctcactggtctacaccaattctgatttacattcgcattcggaagag
gtggcgaaattcacggtgccgaagttgacaaagaaatggtcgaagatcgtaatcagagta
tcgacgactgatgtcaccttatatctaaactgtcacgaaatggccaagcaacgagtaacg
aggattcctctggagttgatgttcgacacagccagcacgttgtacatcgctcaagctggg
cctcatattcaggaaaaatacgatggtctactgcaatccttgaagctctattccggacat
ccagcggatttggtaagatgcacggccgacttcaacttcaacccagacgaggatctcggc
tcaggcgatatcaataacgacttgattgacggtttggaagacgttgacactaatgtgcca
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acaccccctcctcccaatccggactacaaagggccgaagggtgagaaaggtgataaagga
gacaaaggagagagcgttaggggacctccaggtccacctggaccacctggtcaagacgag
ggtccaccagggaagaaaggagaacccggcacgtgcacctgcaatgcaacagccctgatg
gcatcctttacgatgccaaagatgatccaaggaccgaaaggggaacaaggagtgccgggg
caggaggggaaacaaggccaaatggggctgacgggtgcagctggaccacccggagagaga
ggactggaaggaccacagggtcctaagggtgacaaaggagacgtgggaatagcaggaccg
gaaggtcctcaaggacagaaaggggaacctggtcgtgatggaatacccggagagaagggc
gctcaaggacctccaggaccgccaggaaagggtgaattttctggatacgaccccagttgg
aaacctcgaggcatttataggacggagggcatcaccatgagaccaggactgccaggacag
aaaggcgaagccggacttccaggaagcccaggaccgaaaggagagacaggaatcgccggt
gccaaaggatacaaaggcgaaccagggcacaagggtgcaaaaggcgatcacggaaaagaa
ggtccgcgaggaattcaaggattcaagggtgaacctggtgctccgggagcaccggggctt
cctggcgcaccaggtgagaatggaagaccagcagagaaaggtgacaaaggagacacagga
ccagaagggaaaccaggccctgcaggtgcacctggaccaccaggattgcctggattgagc
ggctctggtggaataaacgttggagaagcgatgttaagggaaaagggcgacaagggcgag
agtggtgcacgaggatacaaaggagataagggcaccaaaggcgagaagggagacaaaggt
gattctggaccagccggaattcctggtgtaaatggtatccaaggaccgcaaggcaacaaa
ggcgagccagggaaagacggagttcccggagcaccgggagtcgtcggtgcaaagggcgaa
aaaggtgaaagaggtccgccaggagctacagctatagcgagctctggagactacatcact
atcaaaggtgaaaaaggagcagaaggcaagagaggtagaagagggcgtcctggaccacca
ggaccggtcggcccacctgggaagacgggagcgatgggagaaattgggttacctggatgg
gcgaactccatgaaaggtcgtcctggaactcccggacttcctggacctgttggaccagtg
gggcccaagggagaaaaaggagaacccggtacaccgagcccttacggagtctctgtcggc
ataaaaggcgataagggagacgatggtttccctggaattcctggacaacctggaagagac
ggtcaaagaggacctccagggccacccggaccacctggaccaccgtctcaaggaaactat
attccagttccgggtcccccggggcctcctgggccaccaggaccacctggactatctttg
attggacaaaaaggagaaccaggaattggtagaagtcacatctttggcgaaagagactat
tacggagttagacaggttccaaagaatataaaagattttaaacacaatatgttctttggc
acgctgcaaggacctagaactagcctagacgaattgaaggctctgcgagaactaaagcaa
ctgaaggaacttaaagaacatttaggtgctgcaaccaccgcaactagaggtcccttagaa
agtaccacgaagatcgtaccaggagctgtgactttccaaaataccgaagctatgaccaaa
atgtctgccgtgagcccagttggaacattagcttatatcattgacgaacaagctctgctc
gttagagtgaacaatggctggcaatacatcgcactgggttcgcttctaccaataactaca
ccagcaccaccaaccacgtcaccgcctccggtaaatccacctttcgaggcttccaacctg
atcaaccagatacccgtaaaagcagacggaacagggtggtatccacggatgttacgaatg
gctgctttgaacgagccatttacgggagacatgcacggtgtacgtggagctgactacgct
tgttatcgacaagcgaagcgagctggtttgaggggtacgttccgagcattcctcagctcc
agagttcaaaatgttgacagcatcgtgagacttggggaccgtgatcttcctatcgttaac
ataaagggcgatgtacttttcaactcgtggaaagagatgttcaacggaaacggggcctac
ttctcgcaaaatccaaggatttacagtttcaatggcaaaaatatcctcaccgactttgca
tggccagaaaaggtggcatggcacggatcgcacaaattaggagaccgggcaatggacacg
tattgcgacgcttggcattcaagtagttcggatcgttacggattaggatcaccgttaact
gggggacgcctcttggagcaagttcgttattcctgcgacaacaagttcgcgctgctctgt
atagaagtaaccagcgagaccacaagaaggaggagaagcgtcgaaatttcggaggatgag
gacgaaatgtcggagaacgattataaggagtacttggattctctgatggaaaactaa
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integrated database retrieval system
