Bombus pyrosoma: 122572789
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Entry
122572789 CDS
T07776
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122572789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122572789
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122572789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
CSD2
OB_HELZ2
OB_RNB
Rrp44_S1
DUF3368
Motif
Other DBs
NCBI-GeneID:
122572789
NCBI-ProteinID:
XP_043594169
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All DBs
Position
LG11:complement(781050..785400)
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AA seq
981 aa
AA seq
DB search
MLTTKIFFRKTKGGNVFKTVREHYLRDDIHCGSKACEKCVYRTRNIILDDEDSSASSSKI
MKPYYLLIDTNIILDQIDILEEDIICNVIIVQTVLEEVKHKSSAVYKRLRNIITNPQRKF
YVFVNEHHKDTYVERGPGESTNDRNDRAIRVATKWYNAHLNLYDNRIKTVLLTDDTRNRE
LAEKEGIPVISMEDYILSLENSGFLADKLCKKSYGAVFEGPEIFPCHLTPFELHEGIKNG
KLLQGTFQASKENFLEGFVNVDGVEKSIFIQGRSNLNRAVDCDAVVVELLPEDQWSSPSD
IVLQDEEEADADDDVLKTNKALDKFGSSNKMQKTPTGKVVGIIRRNWRQYCGILQPSNIE
GNVRHLFVPAERKIPKIRIETRQYTVLCKQRIIVAIDSWPRNSRYPLGHFVRALGEIGNK
TTENEVILLEHDIPHSRFSDAVLSSLPEISWSVTDADIAQREDLRYLDICSVDPPGCTDI
DDALHCRDLSNGNLEVGVHIADVTHFVRPGTALDKEAALRSTTVYLVDTRIHMIPELLST
NFCSLREKEDKLTFSCIWEMDRDANIINTRYCKSVICSRAAMTYDEAQLKIDDVTQQDSL
VKSLRNLNNLAKKLKKRRLDNGALLLASPEVRFEVDCETHDPIEVEVKKLRETNSMVEEF
MLLANISVAKKILEEFPECAVLRRHPEPPPTNFEPLIKAAKNQGFTINVNSGKELADSLN
KCHKDSNPYFNTMLRILATRCMMQAVYFVSGMHQPSEYYHYGLACPVYTHFTSPIRRYAD
VMVHRLLAVCIGADATYPDLLDKKKNHALCQNMNYRHRMAQYSNRASVALNTHLFFREKI
QDEEGYILFVRKNALQILIIKYGLEGTLYLNKDKDSGVTFMYNGEDHSQTCGNIVFRTFD
PVTVQISLNRSNIQHEKLIFKLVKPFIPGFSVPPTNTADSCQMVLKESTKETVKRKIGAE
KVSDSNTKGGGSKRKQKKRKH
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaccaaaatattctttaggaaaactaaagggggaaatgtgtttaagacggtt
agggagcattaccttagagatgatattcactgtggatctaaagcttgtgaaaagtgcgtg
tacagaactcggaatataattttagatgacgaggattccagtgcaagcagttctaagata
atgaaaccttattatctattaattgatactaatattattttagaccagattgacattttg
gaagaagatattatttgcaatgtcataattgtgcaaacagtgttggaagaagtgaaacat
aaaagttcagccgtatataaaagattaaggaatattatcactaatccacaaaggaaattt
tatgtatttgttaatgaacatcataaagatacttatgtcgagcgtggccccggtgaaagt
acaaatgacagaaatgatagggcaattagggttgcaacaaagtggtataatgcacattta
aatttatatgacaatagaatcaaaactgtgctattaacagatgatacacgcaacagagaa
ttagcagaaaaagaagggatcccagttatttcaatggaagattatatattatcattagaa
aattcaggctttttggctgataaattatgtaaaaagagttatggtgcagtatttgagggt
ccagaaattttcccatgtcatcttacaccatttgaattacatgaaggcataaaaaatggg
aaacttctgcagggaacctttcaagcttcaaaagaaaatttccttgaaggattcgtgaat
gtagatggagttgaaaaatctatttttatccaaggtcgtagtaaccttaatagagctgtt
gattgcgatgcagttgtggtggagctcttgccagaggatcagtggtcatctcctagtgac
attgttctgcaagatgaagaagaagcagatgctgatgatgatgttttaaaaacgaataaa
gcattagataaatttggttcatcaaacaaaatgcaaaagacaccgactggcaaagttgtt
ggaattatcagaagaaattggagacaatattgtggaatattgcaacccagtaacatagaa
gggaatgtacgacatttattcgtgccagctgaacgaaaaatacctaaaataagaatcgaa
actagacaatatacagtgctgtgtaaacagagaatcatcgtagcaattgattcatggcca
cgtaattctagatatcctcttggtcattttgtacgcgcgttaggtgaaatagggaacaaa
accaccgaaaatgaagtgatattgttagaacacgatatcccccatagtcgattttctgac
gctgtcctcagctcattaccagagatctcatggagtgtcacggacgccgacatagcacaa
agggaagatctaagatatttagatatatgttcagtcgatccaccgggttgcacagatatc
gatgatgcgcttcactgtagagatctatcaaatggtaatctagaagtaggtgtacatatt
gcggatgtaacacattttgtaaggcctggtactgcgttagataaagaagcagcattacga
tctacgactgtttatttggttgacacgagaattcacatgattcctgagttactcagtaca
aatttctgctctttacgagaaaaagaagacaaactaacgttttcttgcatatgggaaatg
gatagagacgcaaatataattaatactagatattgtaagtccgtaatatgttcacgagca
gcgatgacttacgatgaagctcaactaaaaattgacgatgttactcaacaagattcactt
gtaaagtcattaaggaatcttaataatttagctaaaaagttaaaaaagagacgtctggat
aatggagctttattattagcatctccagaagtccgttttgaagtagactgtgagacgcat
gatcctatcgaagtggaggtaaaaaaattgcgggaaactaattctatggtggaagaattt
atgttgctcgcaaatatctcggttgctaaaaagattttagaagaattcccagaatgcgct
gtattaagaaggcatcccgaaccaccgcctactaatttcgagcctcttataaaggccgca
aagaatcagggttttactataaatgtaaatagtggcaaagaattagcagattcgttaaat
aaatgtcataaagacagtaacccttactttaatactatgttaaggatacttgccacacgc
tgtatgatgcaagctgtatattttgttagcggcatgcatcaaccaagtgaatactatcat
tatggtttagcatgtcctgtctatactcatttcacatcacctattcgaagatacgcagat
gtgatggtacatcgtttattagcagtttgcattggggcagatgcaacatatcccgatttg
ttagacaaaaagaagaatcacgcactttgtcagaatatgaactatcgccatagaatggct
cagtattctaatcgagcatcggtagcactaaatactcatttattctttagagaaaaaatt
caagacgaagaaggttatatactttttgtacgaaagaatgcgttgcaaatattgataata
aagtatggcttagagggaactttgtacttgaacaaagacaaagattcaggtgttacattt
atgtataatggcgaagatcattcacaaacgtgtggaaatatcgtatttcgcactttcgat
ccggttactgtgcaaataagtttaaacagatccaatatacagcatgagaaactaatattt
aagttggttaagccgttcattccaggtttcagtgtacctccaacaaatactgcagattct
tgtcagatggtactgaaagaaagtacgaaagaaacggtaaaaagaaagataggagcagag
aaagtatcagacagtaataccaaaggtggaggaagtaagagaaaacagaagaaaaggaaa
cactag
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