Bombus pyrosoma: 122572847
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Entry
122572847 CDS
T07776
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03013
Nucleocytoplasmic transport
bpyo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122572847
03015 mRNA surveillance pathway
122572847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122572847
Enzymes [BR:
bpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122572847
5.6.2.5 RNA 5'-3' helicase
122572847
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122572847
mRNA cycle factors
Common to processing body (P body) and stress granule
122572847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
122572847
NCBI-ProteinID:
XP_043594330
LinkDB
All DBs
Position
LG11:7504142..7510982
Genome browser
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQSEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcatacggacccagcagtcagactctgacgttcctagacaccgaagaa
gctgatttaattggtgcagatacacagggtagcgaattcgacttcactgatttcacgtta
ccctcaccgagtcaaactcaggcctcgcaacacgatgctgcccaaagtcaacctaaccaa
cccgtacaggttaatggaacaagcggcagctcatctttggagttgaagatatctggagca
gcacaaagccttgcggaattgcagtttgaagaagaagaagaagaagcatattacaatcgt
gatttgccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgcaatgtttgccgcaagtggttctgtaatggacgtggaaatacatctggttctcacatt
atcaaccaccttgtcagagccaaacataaggaagttactttacacagagatggtcctttg
ggggaaactgtccttgagtgttactcttgtgctgttagaaatgttttcgtccttggcttc
attcctgcaaaagcagattctgttgttgtattactctgccgccaaccatgtgcggctcag
agttcgttgaaggatatgaattgggatcaagaacaatggaagccattgatagaagaccgt
tcctttttagcttggttagtaaaaattccatcagaacaggaacaattgcgtgccagacaa
atttcggcccaacaaatcaataagttagaggaattatggcgagacaatgttgacgcgacc
tttcaagatcttgaaaaacccggtgtagatgaagaaccgcaacaagtacttttgcggtac
gaagatggataccagtatcagaacatatttggccctctcgtaaaattagaagccgattat
gataaacgtttaaaggaatctcaaacgcaagaaaacatcgaagtacgttgggatgttgga
ctaaacaaaaagacaatcgcctatttcatgttagcaaaaacagacggtgatatgaaattg
atgcacggcgatgaactaagacttcgctacttgggtgaacttcacaagccttggtctgga
attggacatgtaatcaagatccctgataattatggagaggaagtagggatcgaattgaaa
aataattctggcgccccaacggagtgtgttagtaacttcgtcgttgattttatttggaaa
agcactagtttcgatcgcatgcaattagcgttgcggaaatttgctgtggacgacacttct
gtatccggttacatataccatagattgttaggacacgaggtggaagaagttctgtttcgc
tgccatcttcctaaacatttcagtgctccgaatctgccagacttaaatcgttcacaagta
tatgccgtgaaacacgctgtacaaagacccttgtctctaattcagggaccgcctggcaca
ggaaaaactgtaaccagcgctacgatagtttatcaactcgtcaaacaaaacggtggtcct
gtattagtatgtgctccttcgaacacggctgtcgatcaactaacagaaaagatacacaaa
tccaatttaaaggttgtgagactctgtgcgaagtcacgagaagcaattgattcaccagta
agctttcttgccttgcataatcaaatcaagaacatggagacgaatactgaattgcaaaag
ttgcaacaactaaaggatgagactggtgaattgtctagcgttgacgaaaaacgttataga
ttactaaagaaagcagcagaaaaagaattattagaggcagctgatgtgatctgctgcacc
tgtgttggggctggtgatccaaggttacatagacttaaatttcactcaattcttattgat
gagagtatgcaagcaacagagcctgagtgtatggtaccagttgttcttggagcgaaacaa
ctaatccttgttggtgatcactgtcaattagggccagtagttatgtgcaagaaagctgcc
agagctggtttatcacagtctctttttgaaagattagtagtattgggaattagacctttc
agattggaagtacaatatcgtatgcatccagatctatcacgattcccatcaaactttttt
tatgaggggtctttgcaaaatggcgtatgcgcggacgagaggaaattgttgaaaattgac
ttcccttggccagcacctgacaaacctatgtttttctacgttacgcaaggtcaagaagaa
attgcaggaagtggtacatcatacttaaatcgaacggaagcatcgaatgttgaaaaaata
gcaacaagatttttacgttgtggagtaaaacctgaacaaattggagtaataactccgtac
gaaggtcaacgagcttatttagtgcaatacatgcaataccaaggatccttgcactcaaaa
ctgtaccaggaaatcgaagtcgctagcgtagatgctttccagggcagagaaaaagatata
atcattatgtcttgcgttcgatcgaacgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaacgtcgcgttaacccgcgcgaaatacggaatcataatcgtaggaaatcca
aaggtattgtcgaaacagccattatggaatcatctattaagtttctataaggaacagaaa
gttctcgtagaaggaccactgaacaatcttaaagaatctatgattcaattcgccaaacca
aagaaactcgtcaatgctgctaatccaggctctcattttatgtctacgtcgatgtacgac
gcaagggaagctttgataccaggttcggtatacgatagatcaggtactcaggtaaatgga
acgcagaatcataatccttattaccaaaggaacgtacctttagacatcttcagcagaacc
cacgacactattagttacattagcccagaaagagctcaagcagcgatgaacaatgtacca
gttccagtgggaatgttcatgaatatggcacacgtaccaccacggttctataaccagcat
cagcaggccctacaggctagacaaaaccaacgtaatcggcgaggtacagctttatcgaag
aacaaacaaggcccacgaatgggtaaactaagtcaatcagaacagaatactcagccatat
agccagccaggattaccattaacacaaggcacgacacaaggtatgtcacaaccaggtttc
agcctttctcaacccgggctgagtcaagcggaactttctcaagattcgttcgctgtcgga
gagtttcagtcacagatggacggattattatcacaagattcaacttatcagggtgatcga
agtggtttttatcaatccggacagtcacaagccgggggacaattctcccagccatattga
DBGET
integrated database retrieval system
