Bombus pyrosoma: 122573048
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Entry
122573048 CDS
T07776
Name
(RefSeq) uncharacterized protein LOC122573048 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122573048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyo03021
]
122573048
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122573048
Transcription machinery [BR:
bpyo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122573048
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122573048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
122573048
NCBI-ProteinID:
XP_043594890
LinkDB
All DBs
Position
LG2:9204623..9217676
Genome browser
AA seq
1900 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
AVTTHITPSTETVTQGKPVATTVSSQASKQVAKQFPAAAASLLKNAGTNNGPRIAPASSI
AVASAKPVSRDPRLKTTSAQDVPVSSVDPRQRISTPTQKDSRGEGQAQLAAHTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNKNFSGNANKDAVS
HRTSQKKDPRLSSNSSGNLNSNNSKGSQSLSMGSNSSLSASNRGGGNNDSKSKDSKSSNS
RTSSSSAIDKSASSKSSHRKLGNKSRSKQPQTSPCKIPKVDRDTSPVRSKSREKDSGDSS
PSSRTSPQSFQNSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNLSLSNSSGVTEEEQSGSL
IVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAVEPTLESSSKDEDL
RATLPLPGAAASVIEKKEDLDLRVLPPAVNTNKRQTAEHMESTLVKKTKAEKFDALFGNE
DVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNTDDKRDARDRN
RDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQAAE
QLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDIAGPGERTST
FSPSGDKEMMRNKDHPIARNPNGPRWQNQPWQQPGPWAHPPGPPYGGPQGHFNSDFRPVG
PWQNPRHFGPMRPDYQYHGGFNHSIGPNPRLGPGMMGPIGPNGPLMSNLLPNGPIGPMGM
PNPPISLPGMNGPGMMINNGPMTSLISNTNMSSLNASRNVSPSSSSKYDIDDGDQNYTTT
MIKNPNPHSRELPPPDSKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPRE
IGFQDGIRRILIDDKITITCAFNDNYKEFIYEGEVHRIKLGAPTRELYIDDRWYECYFGG
MPITVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFE
IEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVKI
AGMKGEEPIEAPPTPPLLTQKPKVDAASTPTQFSAVEHESTSQDGSDLRSTPKPDLQLDV
LSSALPSAMAPSSGLSYQAEPAENPPTTAPPLSLPLNMNELFQRLVETGIVSNLSEQKKQ
EEEEKKEPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDWH
FRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAEDS
PQEASQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYKE
KSLVRALEKSALEETIEEMEDEKKESSDETFTEENKTDELSMEALKTEFETVEPSDEIIE
DKVPEESTEVETKEEETIIEDNADIEQNEKMEEQELEYSNKEDVDMESIGKDDTVETEIP
ETENVDKSFENIKIKEEPIDEPEEQLEEEHFDFTNIEIKEEPIEQDPDPEESIITEPATV
DTTYAAVKSSIDGNVELDSTPAAMPAAPSRIKINITKPLCINKEPEDSKEKEKPIVETPT
EEIIEPLVPASIKPALQGRKLSNLPPVERGQELSGLCSIM
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaggaaatagcggatgagtatatctcatcgttgtctgatttg
acaattaacagtaaaccattaattaatatgcttactatgttggctgaagataacatagaa
catgcaccagcaattgtacaagctgttgagaatcatctacaaaaggtgagaagtgatatc
aaattacctgtcctttacttgattgattcgattgtgaagaatgttaatggagcatattta
aatctcttcactcaaaatatagtaaatactttttgtggagtgtttgaaaaggtggatgag
aatacaagagccagcatgtggaaattgaggcaaacatggaatgatgtatttccagcaaag
aaattattttctttggacgtacgagtgcaaagtattgatcctgcctggccaatcactgcc
tctcctactagtgtttcttctggatctatccatgttaatcctcgttttttttcaatgccc
caacaatcagcaacatccattgtctcacaaccaattgtagcacctgtaaagcttccacca
ggtgatcctgtgacaccaacggaagcagcaatgcgagagcaattactaaagaaacagcga
gaactgatagaactacagaaaaaaaagattgaattagaattacttcaagctaaagctaat
ttagaacaacaacagcggcaactcgataaacaagctggaaatttaaaagctgaactggtt
gcagttacaacacatattacgccaagcacagaaactgtcacgcaagggaaacctgttgca
accactgtgtcaagtcaagcatcaaagcaagtagcaaaacagtttccagcagcagccgct
tcgcttctgaaaaatgcaggaacgaacaatggaccacgaattgcaccagctagtagtata
gcagtagcatcagctaaaccggtatctcgtgatccaagactaaaaactacctcggctcaa
gatgtaccagtttcaagcgtggatcctcgtcagcgaataagtacaccaactcagaaggat
tcgcggggtgaaggccaagcgcagttagcggcacatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacgttaaacgctagtaataacaataatgctaatacg
aacctcaacaataataacaataaaaatttcagtggtaacgcaaataaagatgctgtgtcg
catcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaacctaaac
agtaataattccaaaggttctcaaagtctatctatgggtagcaatagttctttatctgcg
agtaatagaggaggtggaaataacgattccaagtcgaaagactcgaagagttcgaattct
cgaacttcttcatcttcggcaatcgacaaatctgcttcctcaaaatcctcgcatagaaaa
ctaggtaacaaatcgcgatctaaacaacctcaaacatctccgtgtaaaataccgaaagtc
gacagagataccagtcctgttaggtccaaatctcgtgaaaaagatagtggagacagttca
ccatcctcgcgtacctctccccaatccttccaaaactctaaaaatcgaaaaaagaataca
aaatcgagaaaacgcagtccaagccctccatatagaattcctaggcgcaatgatgcaaaa
tccaatttaagtctaagcaattctagtggtgttactgaggaggagcaatctggttcattg
atagtctctcctcctcacccacctacatttaaagaaatcagaccgaatgctagacaaaga
aattacgtaagacgtaataaggatggcagtcttagtcccgagcgctctccagcaaatgct
ggaaacgttcaaactgctgtggaaccaactttggaatcatccagcaaagatgaagacttg
agagcaacactacctcttccaggtgcagccgcttctgtaatagaaaagaaagaggactta
gatttgcgtgtattaccaccagcagttaatactaacaaaagacaaactgcagaacacatg
gaatctacattagtaaagaaaacaaaagctgaaaagttcgatgcattatttggaaatgaa
gatgttgatctacgaacattaactcatcctaaagctggacgaccacctacaccgccccca
cccgtaatatctggtgaagatggcaaagatgggtgggcaaaactaaagacaccatcaaag
aatgacagagaaaagcaagctaataatactgatgataagcgtgatgctagagatcgtaac
agagatagattaggtagactgaggctttacaataaacttccggatgatcctaaagaaaga
agaagaacattatcgaacgaagatcaagataacagatcaggtcgaagaggtcgagaaaat
gataaacctgaaaagaatgaagacagaaatatagaaataataatgaaacaagctgcagaa
caactgaatcaaggatccattactaaaactcaatacaatactctcattcaagaagtttta
catatgagcgaagatcggaaattaagagctgcacaacgaaaggaaaaagaagtaggttct
attgtatgggaaaagggtgtaaatttggatatagcgggtccaggtgagcgtacgtctaca
tttagtccttctggtgataaggaaatgatgagaaacaaagatcatcctattgcaagaaat
ccaaacggccctagatggcaaaatcaaccatggcaacaaccaggaccatgggctcatcca
ccgggacctccttacggtggaccacaaggacattttaattcagattttagaccagttggt
ccatggcaaaatccaagacacttcggaccaatgcgacccgactatcaatatcacggtggc
ttcaatcattctattggtccaaatccacgattaggacctggaatgatgggacctatagga
cctaatggtccgcttatgtcaaatttattacctaatggtccaattggtccaatgggcatg
cctaatccacctatatcattaccgggaatgaacgggcctggaatgatgataaataatgga
ccaatgacaagtcttatatcaaatacaaatatgtcatcattgaatgcttcaagaaacgta
tcgccaagttcgtcttcgaagtatgatatcgatgatggtgatcaaaattatacaacaacg
atgataaagaatccaaatccccatagtcgtgaattaccgccgccagactcaaaattatta
gatgaaattgcaagagatactatgaaatctatagatatagacatacagcatataccacgt
gaaatcaggtactacggtcaaactggagtagtttttatgaattgggatgatccaagagaa
atcggatttcaagatggtatacggcggattttaattgatgataagatcactataacctgt
gcatttaatgataattacaaagaatttatttatgaaggtgaagttcatagaattaaacta
ggtgcaccaacgagagagttatatattgatgataggtggtatgagtgttatttcggtggt
atgccaataacagtagatcttggtgggaaaaaggttagcgtgaaattggaaggacctcca
ccccttgttaagattggtactgtaaagagaacagacttagtagttgccaaaattaatctt
attattaatgcccgaaatatggttcctgtatttttagatgcaaaacctcaaatatttgaa
attgaagggaaacctcatacacttgaatttatagactcgttacaaacagttcttttaaat
gggcggccatttaaagtggaattcggtggactgcctaaaccaattattgttagggataaa
aagcattttataagattttcggtactgcctagaggtgtccgaccaggatatgttaagata
gcaggtatgaaaggtgaagaacctattgaagcaccacctaccccgcctctattgacacaa
aagcccaaagtggatgcagcttctacaccaacgcagttctctgctgttgaacatgaatca
acgtcacaagatggttcggatcttagatctactcctaaaccggatttgcaattagatgtg
ttatcttcagctttaccatctgcaatggcaccatcgtctggattatcttatcaagctgaa
ccagctgaaaatccacctacaactgccccaccattatcactaccgctgaatatgaatgaa
ctgtttcagagattagtagagactggtattgtatcgaatctttctgaacaaaagaaacaa
gaagaggaagaaaagaaggaaccagaaattattccggtttcatttgataaaccagaaaca
cttaaagttaagcaaccggctattgcggcagcattgtacagtggcatgcagtgtagttct
tgtggtgccagatttgcaccagaattagcaactcggtatagtcatcatttagattggcac
tttaggcaaaacagacgagaaagagattctgcaaggaaggctcattcacgaccttggtat
tatgatgttagtgattggatacagtttgaagaaattgaagatttagaagatagagtacaa
agttggtttgaaacggaaaaacagacggctgatacggaaggtatcacggccgaggattct
cctcaagaagcctcacagcctagtgttcccactggaactgatgaggattctagatgccaa
gtatgtcatgatgcatttgaacaattttataatgaagaaaaggaggagtggcatctaaga
ccagcaattaactttgaaggaaagaattatcatccattgtgtcttgatgattacaaggaa
aagagtctcgtgagagctttggaaaaatctgcgcttgaagaaacaatagaggaaatggag
gatgaaaaaaaggagagctcagatgaaacattcacagaagaaaataagactgatgaatta
agtatggaagcattaaaaactgaatttgaaacagtagaaccgtcggatgaaataatagaa
gataaggtaccggaagaatctactgaagtggagactaaagaggaggaaactataattgaa
gataatgcagatattgaacaaaatgaaaaaatggaagaacaagaattagaatatagtaat
aaggaggatgttgatatggaaagtataggaaaagatgatacagtcgaaacagaaatacca
gaaacagaaaatgtggataaatcctttgaaaatattaaaattaaagaagaaccaattgac
gaacctgaggaacaattggaagaagaacatttcgattttactaacatagaaattaaagaa
gaacctattgagcaggatccagatcctgaagaaagtataataactgaacctgcaacggtt
gatacaacatacgcagctgtgaagagttctatagacgggaatgtagaattggattctacg
cctgcggcgatgccagcggctccatctcgaattaaaatcaatattacgaaaccattgtgt
atcaataaagagccagaagattcaaaggaaaaagaaaaacctatagttgagacacctact
gaagaaataatagaacctttggtgcctgcttccatcaaacctgctttgcaaggtagaaaa
ctttcaaatttacctcctgtggaaagagggcaagagttatcgggactctgctcaattatg
taa
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