Bombus pyrosoma: 122573489
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Entry
122573489 CDS
T07776
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122573489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122573489
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122573489
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
122573489
NCBI-ProteinID:
XP_043595836
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All DBs
Position
LG12:complement(11943143..11946968)
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AA seq
870 aa
AA seq
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MDTTEDCSGKCQAVEIENQQVNQLIPGYENFHDFVQEAFDAIKLGIKCANSLPTGSNFNY
YSCFPSFLKAKDENTKLSMDVMQHLLGLAGIKGNMSNLDIEEKFDLLLETNDMLLDRANA
LMDKECGIAKNTEVELLVSSAKGQPDGVNGSWNKHVYRSQATENVQSVRLLAGKNIQRPQ
LMFKDKIDNSSKPWCPRIKDKPNSLKPLAIYLEEGENGEVFSHPYEYELDMFVPPNDQLK
KSVPRKYKSLEETLLVMIKDPSDIQLLVEDLKRYKEIAIDLEHHSYRSFQGITCLMQIST
GDTDYLIDTLSLRSELHELNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAA
KQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDLLRN
ALIDVANGQINILKAVYDRSTEICKKTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKEL
HKWRDQTARGEDDSIAYVLPNHMLLNIAETLPREMQGILACCDSIPPLVRQNLLKLHKII
LKAREQPLIKPIIEDDIRQRLTQRNPVNDSKMWMYSPHDIPSDMEARADLPCLLDENNII
EEQISHIAMKHAVTVFDSPTTSENEEAEMDEQESNRKKRFLFVSPFERYKRVIPMIAEQE
AQERERLRQEEENRLNELKKKEDEMAESKNRVYEHFKSVSQMVTEGSVSNLPKKPSQIPL
SQMSGRKRKRDSNINKEDEVQDKKVKDDLSNPTPMLETKTTQHVKQESDEIERFSEEQNV
PESITKSQKQASSNETINSLRSRKKGEKDYIIKELRKKGMMPSKTFDYKVVDFSTFQGGS
TNVSNQVNFEQTMKRKKEKKRKRKKQKLNI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggatactacggaagattgcagtggcaaatgccaagcggtggaaattgagaatcaacaa
gttaaccaattaatacctggatatgagaattttcacgattttgttcaggaagcattcgat
gccataaaacttggaattaaatgtgctaatagtctaccaactggatcaaatttcaattat
tactcgtgttttcccagtttcctcaaagccaaagatgaaaatacaaaattgtcgatggac
gttatgcagcatttattggggttagctggcataaagggcaatatgtcgaatcttgatatc
gaagagaagtttgatcttttattagaaacgaacgacatgcttttggaccgagccaatgcc
ttaatggacaaagaatgtggcatcgctaagaataccgaagtagaattgctggtgtcgagc
gcaaagggtcaaccagatggagttaacggttcatggaacaaacatgtttatcgatcccaa
gccacggagaatgttcaatctgttcgtttattagctggtaaaaatattcaaaggccgcag
ctaatgttcaaagacaaaatcgacaatagctctaaaccttggtgtcctagaattaaagac
aagcccaattctttgaaacctttggctatttatttggaagaaggtgaaaatggtgaagtc
tttagtcatccttatgaatacgagctggatatgtttgtcccccctaatgatcagttgaaa
aaatcggtaccgagaaagtataaatccctggaagaaactctattggtaatgatcaaagat
ccgtcggatattcagctattggtagaagatctaaaaaggtataaagaaattgctatagac
ttggaacatcattcgtatagaagctttcaaggaatcacctgtttgatgcagatctcaaca
ggagatacagattacctgatagatactctgtcgttgcgatctgaattacacgagttgaat
gaaatttttactaagtctacgatactaaaagtttttcatggagcagatttagacattcag
tggcttcagagagacctatctctgtacgtagtaaacatgtttgatacgcatcaagcggca
aaacaacttaacctgccgtacttaagtttagcatatttactaaaacattactgtaatgta
gatcctgataaacattttcaaatggcagattggcgcataagacctttaccagagaaactt
ataaaatatgccagggaggatacgcattatttattgtacataaaggatttattaaggaat
gctttgatagacgttgctaatggacaaatcaatattttgaaagctgtatacgacagaagt
acagagatttgtaaaaagacttatataaaaccagtttggacagaggaaagttgcatgatt
atgtatagaaagagccagaaaatgtttaataataaacagctttatgctctaaaagaattg
cataaatggagagatcaaactgccagaggggaagatgatagtatcgcttatgtattgcca
aatcatatgttattgaacatagctgaaacattgcctcgtgaaatgcaaggaattttggca
tgctgcgactctattcctcctttggttagacagaatttattaaagctacataaaataata
ttaaaggctagggaacagccgcttattaagccaatcattgaagatgatatcaggcaaaga
ttgacgcaaagaaatcctgttaacgattcaaaaatgtggatgtattcacctcatgatatt
cccagtgatatggaagcacgagctgacttaccatgtttgttggatgaaaacaacataata
gaagagcaaatttcgcatattgcgatgaagcatgcagtgactgtgtttgacagcccaact
acgtctgagaatgaggaagcagaaatggacgagcaggaaagtaatagaaaaaaaaggttt
ctcttcgtaagtccgtttgaacgatacaaacgggttatacctatgatagcggaacaagaa
gcacaggaaagagaaaggctaagacaagaagaagaaaatcgtttgaatgaactaaaaaag
aaagaagatgaaatggcagagagtaaaaacagagtttacgaacattttaaaagtgtttct
caaatggtgacagaaggaagtgtgtcaaatttaccaaaaaaaccatctcaaattccactg
agtcaaatgtcgggccgtaaaagaaaacgagattcaaatattaacaaagaagatgaagta
caagacaaaaaagtcaaagatgatttatcaaacccaactccgatgttagaaaccaaaact
actcaacatgtaaaacaagaatcagatgaaattgaacgttttagtgaagagcagaatgta
ccagaaagtattacaaaaagtcagaaacaagcatcgagtaatgaaactattaattcgtta
cgctcaagaaaaaaaggagaaaaagactatataattaaggagttgagaaagaaaggtatg
atgccgtcaaaaacattcgactataaagtcgtagattttagtacttttcaaggaggtagt
acaaacgtatccaaccaagtaaactttgaacaaacgatgaagaggaaaaaagaaaaaaag
cgaaaaaggaagaagcaaaaattgaatatataa
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