Bombus pyrosoma: 122573903
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Entry
122573903 CDS
T07776
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122573903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyo03019
]
122573903
Enzymes [BR:
bpyo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122573903
Messenger RNA biogenesis [BR:
bpyo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122573903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
122573903
NCBI-ProteinID:
XP_043596793
LinkDB
All DBs
Position
LG12:complement(7617709..7628412)
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AA seq
533 aa
AA seq
DB search
MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIRMERDLKNSLFDTLSDRYMAWKRNI
QQFVIVQFGITTFYRVPSKNAYKADSFSFYLFPRSIPLKNRQLSWEVEAIDFLYKHGFDF
NKFLVGGISYVDEIDEKLLCDHIAQSDVENYLSLLSYDEEENFKECKSKVCEWISNELEN
APLKLEVITPMVQYVLHKDLRYNYNNIWTTANYKSIDVMKILSNAQDDSFKKDNLEQVLL
DTYVGFSKVFKLLSSSKKTIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYD
TKFLSFELRKLYSRVEVNWKINSLNILYEYFTTKGRITTYNSPEIIFNEEFSHKKNYHSA
GWDSYFCGYVFVKMAHIFCVKKFGTGLEERAASHSELMSSVKGFINSINITRGNEMYMRL
DGEDPVLSRPEWLHVKLKSPSLDIKQLVEKFSSYGSVDVMPFARRRVLVAVSSHNTASEI
LRRFKSSEELQVTRYNRIKHATSMTIFLWSGAVLSGGILAWMLKNISKTYINQ
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagttttgaatagcaattttgatgctgtatatccacggatagagaatgctata
aacaatgcagctttcattgcgatagatgctgaaatgtcaggtatacgtatggagagagat
ttgaaaaatagtttatttgatactctcagtgatcgttacatggcatggaagagaaacatt
cagcaattcgtaattgtacaatttggcattacaactttttatcgtgttccctctaagaat
gcctataaagcggacagttttagtttttacttgttccctagatctataccattaaaaaat
agacaattgtcgtgggaagtggaagcgatagattttctttataaacatggcttcgacttt
aataaattcttagtcggaggtatttcgtacgtcgacgaaatagatgagaaattactgtgc
gatcacatagcacaaagcgacgtagaaaattatttgtcacttttatcctacgacgaagaa
gaaaatttcaaagaatgcaagagcaaggtttgcgaatggatttctaatgagttagaaaat
gcaccgttaaagttggaagttatcactcctatggtacaatatgtattacataaagactta
aggtataattacaacaatatttggactacagcaaactataaatcaatagatgttatgaaa
atattgagtaatgcgcaggatgattcgttcaagaaggataatttggaacaagtactgcta
gatacttatgtaggtttttccaaagtatttaaacttttgtcctctagtaagaaaacgata
atagggcacaatatacttttggatttaatgttcatgcatcaacaattctataagccacta
ccagattcatacaaagaatttaaaagtaatatacatacattatttccacaaatatatgac
acaaaattcttaagctttgagttgcgaaaattatatagcagagttgaagtaaactggaaa
ataaattcactgaatattttgtacgaatattttacaactaaaggacgaattacaacttat
aattcaccagagattatctttaatgaagaattttcacataaaaagaattatcatagcgct
gggtgggattcttacttttgtggatatgtatttgtgaaaatggcacatatattttgtgta
aagaaatttgggacgggtctagaagaaagggcagcgtctcattctgagttaatgagcagc
gtaaaaggttttataaattctataaatataacaagaggcaatgaaatgtatatgagactt
gatggagaagatccagtgttatcgagaccagaatggcttcatgtcaagttgaagtcacca
tctctagatattaaacagttagtggagaaattctcatcttatggttcggtggatgtaatg
ccttttgctcggagacgcgttttagtagctgtctcaagccacaataccgcgtcggagata
ttgcggcgattcaagagcagcgaggaattacaggtgacacggtacaaccgcataaagcac
gcgacatccatgaccatttttttgtggagcggagctgtcctgtccggaggtattctcgcc
tggatgttaaaaaatatttctaaaacgtacatcaatcaataa
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