Burkholderia pyrrocinia: ABD05_00495
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Entry
ABD05_00495 CDS
T03962
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03410
Base excision repair
bpyr03430
Mismatch repair
bpyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABD05_00495
03430 Mismatch repair
ABD05_00495
03440 Homologous recombination
ABD05_00495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpyr03400
]
ABD05_00495
DNA repair and recombination proteins [BR:
bpyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ABD05_00495
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ABD05_00495
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABD05_00495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AKL98804
UniProt:
A0A0G3WMS7
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All DBs
Position
1:105550..107247
Genome browser
AA seq
565 aa
AA seq
DB search
MTRIVTRPVAPADAEVLARHGLHPVLARLYASRGVQSPTDIETALARLVPPTELKGCADA
ASLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
VELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPG
CAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSDMSL
GIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLADVDPADACTITLFNPEW
HQGVIGIVAGRLKEKFHRPSFTFAHADDEGKRVKGSGRSIAGFHLRDALDLVSKREPDLI
VAFGGHAMAAGLTLDTENVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKEKHLKLQLARGRQRFNAIWFNHTEPLPASAL
IAYRLVADTWNGVTRVQLIVEHAAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccggatcgttacccgccccgtcgcgcccgccgacgccgaagtgctcgcgcgccac
ggcctgcatcccgtcctcgcacgcctgtacgcgtcgcgcggcgtgcagtccccgaccgac
atcgagaccgcgctcgcacgcctcgtcccgcccaccgagctgaaaggctgcgccgacgcg
gcgtcgctgcttgccgacgcgatcgccgacaaacgacgcctgctcgtcgtcgccgactac
gactgcgacggcgcgaccgcgtgcgcggtcgcggtgcgcggcctgcggatgttcggcgcg
cagatcgactacctggtgccgaaccgcttcgaatacggctacggcctcacgcccgagatc
gtcgagctcgcggccgcgcgcaagcccgacctgctgatcaccgtcgacaacgggatcgca
agcgtcgcgggcgtcgaagccgcgaacgcacgcggcatcgacgtgctcgtgaccgaccac
cacctgcccggcgacgcgctgcccgccgcccgcgcgatcgtcaacccgaaccagcccggc
tgcgcgttcccgagcaagcacatcgccggcgtcggcgtgatgttctacgtgctgctcgcg
ctgcgcgccgaactgcgccgccgcggcgcattcgcaagcaaggaagccgagccgcgcctc
gacggcctgctcgacctcgtcgcgctcggcaccgtcgccgacgtcgtgcggctcgacggc
aacaaccgtgtgctcgtcgcacaggggctgcagcgcatccgcaacggccgcatgcagccg
ggcatcgccgcgctgttccgcgccgccgcgcgcgaagcgcgcaccgcgtcgggcttcgac
ctcggcttcggcctcggcccgcggctcaacgccgcggggcggctgtccgacatgtcgctc
ggcatcgagtgcctgatcaccgacgacatcggccgcgcgtgggatctcgcgcagcagctc
gacgtgatgaaccgcgagcgccgcgagatcgaggccggcatgcagcagcaggcgctcgcc
gatctcgccgacgtcgacccggccgacgcgtgcacgatcacgctgttcaaccccgagtgg
caccagggcgtgatcggcatcgtcgccgggcggctcaaggaaaaattccaccgcccgtcg
ttcacgttcgcgcacgcggacgacgaaggcaagcgggtcaaggggtcgggccggtcgatc
gccggcttccacctgcgcgacgcgctcgacctcgtgtcgaaacgcgagccggacctgatc
gtcgcgttcggcggccatgcaatggcggccggcctcacgctcgacaccgagaacgtgccg
cgcttcgcggccgcgttcgaggccgtcgcgcgcgaatggctgtccgacgacgcgctcgcc
cgcgtgatcgagaccgacggcgaactcgaggacgcatacttcacgccgcagttcgtcggg
ctgctcgacgaggccgtctgggggcaaggttttccggccccgcttttctccggcgaattc
gacgtcgtgtcgcagtcgctcgtgaaggaaaagcacctgaagctgcagcttgcgcgcggc
cgccagcgcttcaacgcgatctggttcaaccacaccgagccgctgccggcgagcgcgctg
atcgcgtaccgcctcgtcgccgacacgtggaacggcgtcacgcgcgtccagttgatcgtc
gaacacgcggccggctga
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