Burkholderia pyrrocinia: ABD05_01625
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Entry
ABD05_01625 CDS
T03962
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABD05_01625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyr03019
]
ABD05_01625
Enzymes [BR:
bpyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABD05_01625
Messenger RNA biogenesis [BR:
bpyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABD05_01625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKL99006
LinkDB
All DBs
Position
1:complement(347316..348875)
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AA seq
519 aa
AA seq
DB search
MSAGPAGLTHDVPAAPFERNATMSDSVAKPVDATFDQFGLAADILKAIAEQGYTTPTPIQ
AQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRE
LADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTAN
LGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSAEIKKLASTYLRNPQ
TIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLE
RDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGLDIVELPAVINFDLPFSA
EDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLEVQTLALDKPARQRHDER
GSERGGERGGDRNSERGGRRERDEHRGASGRRSAGSERSGHHRRHDAPVDDFFLKPYEPS
AAAKLSDDAQPAQQPEKKGPKRQVAALLGGFGMPRKPSA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaggcccggctggcctgacgcacgatgtccccgccgcgccttttgagcgaaac
gccaccatgtccgattctgtcgccaagcccgtcgacgcaaccttcgaccaattcggcctt
gccgccgatatcctgaaagccattgcggagcaggggtatacgacgccgacgccgatccag
gcgcaggccattccggtcgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggc
accggcaagaccgcgagtttctcgctgccgatcatccagcgcctgctgccgcaggccaac
acgagcgcgtcaccggcgcgccaccccgtgcgtgcgctgatcctcacgccgacccgcgaa
cttgccgaccaggtcgccgcgaacgtgcacgcgtatgcgaagcacacgccgctgcgcagc
gcggtcgtgttcggcggcgtcgacatgaacccgcagatggccgaactgcgccgaggtgtc
gaggtcctgatcgcgacgccgggccgcctgctcgaccacgtgcagcagaagacggcgaat
ctcggccaagtgcagatcctcgtgctcgacgaagccgaccggatgctcgacatgggcttc
ctgcccgatctgcagcgcatcctgaacctgctgccgaaggaacgccagacgctgctgttc
tcggccaccttctcggcggaaatcaagaagctcgcgtcgacctacctgcgcaacccgcag
acgatcgaggtcgcacgcagcaactcgacgaacgcgaacgtgacgcagatcgtctacgac
gtcgccgaaggcgacaagcaggcggccgtcgtgcagttgctgcgcgatcgcgggctcaag
caggtgatcgtgttctgcaacagcaagatcggcgcgagccggctcgcgcgcaacctcgag
cgcgacggcgtggtcgcgtcggcgatccacggcgacaagacgcagatcgagcggatgcag
gcgctcgacgcgttcaagcgcggcgaaatcgaggcgctggtcgcgaccgacgtggccgcg
cgcggcctcgacatcgtcgagctgccggccgtgatcaacttcgacctgcctttcagcgcg
gaagactacgtgcaccggatcggccggacgggccgcgcgggcgcgaccggcgacgcgctg
tcgctgtgcagcccgaacgagcgcaagcagctcgccgatatcgagaagctgatcaagcgg
ccgctcgaagtgcagacgctcgcgctcgacaagccggcgcgccaacgtcacgacgagcgt
ggcagcgagcgcggcggcgagcgtggtggcgatcgcaacagcgagcgcggtggccggcgc
gagcgcgacgagcatcgcggcgcgtcggggcgccgctcggccggttccgagcgcagcggc
catcaccgtcgtcacgacgcgccggtcgacgatttcttcctgaagccgtatgaaccgtcg
gccgcggcgaagctgtcggacgacgcacagcctgcgcagcagcccgagaagaaagggccg
aagcggcaggtcgccgcgctgctcggcgggttcgggatgccgcgcaagccgtcggcttaa
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