Burkholderia pyrrocinia: ABD05_07365
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Entry
ABD05_07365 CDS
T03962
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABD05_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyr03021
]
ABD05_07365
03400 DNA repair and recombination proteins [BR:
bpyr03400
]
ABD05_07365
Enzymes [BR:
bpyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABD05_07365
Transcription machinery [BR:
bpyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABD05_07365
DNA repair and recombination proteins [BR:
bpyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABD05_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AKM00028
LinkDB
All DBs
Position
1:1606604..1610851
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLSFTGVSEVIRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKISLYATTVGRAILSEILPHGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GIVRFTATMRYVTNAKGEQIVISRSGEAMITDDFGRERERHKVPYGATLLQLDGATIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPASYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKES
SDRERFDQIAAEEAFDFGTPSAPAAEEPQQHPAAE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagttttcgacgcgatc
aagatcggtctggcttcgcctgacaagatccgttcgtggtcgttcggcgaagtgaagaag
ccggagaccatcaactaccgtacgttcaagccggaacgcgatggtctcttctgcgcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgtctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgtcgcgag
cgcatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcgtacgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgtgagctgctgcgcgcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgctcgggcatcaagcccgagtggatgatcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctggacggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggtcgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctggaagtgatgggcgtcgcgacgaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgcctgtggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgtgcgccgacgctgcaccgtctcggtatccaggcgttcgagcccgtg
ctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctgtcgttcaccggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaagtcgagctggcatcgcgcgtcaacgtgcggatcaccgaaatggtccacaacgaagac
aagtcggaaggcgcaccggcattcgtgccgaagatctcgctgtacgcgacgaccgtcggt
cgcgcgatcctgtcggagatcctgccgcacggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggtctgcgc
gcgacggtggtgttcgccgaccagctgatgcagtcgggtttccgtctcgcgacgcgcgcc
ggcatttcgatctgcgtggacgacatgctcgtgccgccgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggagccggtgacggaccgcgacggcaacgagacgcgc
caggagtcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtg
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtcacgcaggatctggtcgtggtggaagacgattgcggc
acgtcgaacggcgtcgcgatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcgctg
cgtgaccgtatcctcggccgcgtcgcggtcgcggacgtcgtgaacccggaaacgcaggaa
acgctgtacgaatcgggcacgctgctcgacgaaacggcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctgacctgcgaaacgcgttacggcctgtgc
gcggcctgctacggccgtgacctcggccgcggctcgctcgtgaacgtcggcgaagcagtc
ggcgtgatcgcggcacagtcgatcggtgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcttcgtcggtcgaagcgaagagcaac
ggtatcgtgcgcttcacggccacgatgcgctacgtcacgaacgcgaagggcgagcagatc
gtcatttcccgttcgggcgaagcgatgatcaccgacgacttcggtcgcgagcgcgagcgt
cacaaagtgccgtacggcgcgacgctgctgcagctcgacggtgcgaccatcaaggcaggc
acgcagctcgccacgtgggatccgctgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgatgtgacc
ggcctgtcgacgctggtcgtgatcgacgtgaagcgtcgcggttcgcaggcttcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcaaacggcgaagaagtgaagattccgggcacg
gaacacgcagtgcagatcggcttccaggtcggcgcactgattaccgtgaaggatggccag
caggtgcaggtcggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggcggtctgccgcgggtggcggaactgttcgaagcgcgttcgccgaaggatgcc
ggcattctcgcggaagtcaccggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgatgctcaggtcgtcaacaagggcgaaatgatcgtggacggtccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttc
atcccgggcgagcaggtcgaacgttccgacatgctggacgagaacgatcgcatgatcgcc
gaggacaagcgtccggcttcgtacgacaacgtgctgctcggtatcacgaaggcatcgctg
tcgaccgactcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggtctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcacgcaaggcgaaggaatcg
tcggatcgcgagcgtttcgaccagatcgcagcggaagaagcgttcgacttcggcacgccg
agcgcgccggcagccgaagagccgcaacagcacccggcagccgagtaa
DBGET
integrated database retrieval system
