Burkholderia pyrrocinia: ABD05_11170
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Entry
ABD05_11170 CDS
T03962
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABD05_11170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpyr03019
]
ABD05_11170
03009 Ribosome biogenesis [BR:
bpyr03009
]
ABD05_11170
Enzymes [BR:
bpyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABD05_11170
Messenger RNA biogenesis [BR:
bpyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABD05_11170
Ribosome biogenesis [BR:
bpyr03009
]
Prokaryotic type
rRNA processing factors
ABD05_11170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
LLC1
Motif
Other DBs
NCBI-ProteinID:
AKM00716
LinkDB
All DBs
Position
1:complement(2415054..2418245)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMSQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVPAPAPVAATSGGFIGWLKGLFGVSPAAAPAPVAPAPAKEQAARPAR
ERTEKTEQRGGDRNRNRRGGAQQVQGGRDQAAAGRGQPQRQEREGKEAREPREGRELREG
REPREGRENREGREGREGREGRGQREGREPREPRESREPREPRENREPRERAEQPEGVDA
AGRGERQERGERRERGERRKPTQHAATLETVNRGENHPEPEADKVVAEALPGAELAADAE
AVARDGEERRRRRRGRRGGRRERDEDGAIVDQAEQGQDGEAAVQTVTPEASAAAEPAHTA
APAVVAAVAAAGAVVVEATVEQPAAPAAVEAQPAPVEAAPAAPVEPAVAVQAAEPAPVAP
AVDTEAGPAPVAVSPTDAFEVPAAPAAVPAAVEAPQSAPVEQVAPAVTTEAAPVAVEPVA
VEPVAVEPVVVAPMHVEPAPVEAVAAPAPAPAPVQPVAAPASASLDVVLEQAGLVWVNTD
ADKFAAAQEVASRLPRPARVPRERKALPPADTAPMQQVETTHH
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagatcgccacggtttcctgccgttcaaggaagttgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggaactgatc
gtccaggtcgagaaggaagaacgtggcaacaagggcgccgccctcacgaccttcatctcg
ctcgcaggccgctacctggtgctgatgccgaacaatccgcgcggcggcggtgtgtcgcgc
cggatcgagggcgacgagcgccaggaactgcgcgagacgatgtcgcaactgcagattccg
gacgggatgagcatgatcgcccgtactgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aattccggccagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcccgtgcgttcatggatatcgtgatgccggacaatgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcccgcttccagatcgagcaccagatcgaaacggcctattcg
cgcacggtgccgctgccgtccggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgtgcgaccaagggcgcggacatcgaggaaaccgcaacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctccgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcatgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcaccggtcacatccgcgacaccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgacgcgcgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagcggctcgcgaactcgagtcggaaaccggctacagcaag
cgcaccgcagaagtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagcgt
ccggccccgagcccggcgccacagcgcccggtcgagcccgttccggcccccgcaccggtc
gccgcgacaagcggcggcttcatcggctggctgaagggtctgttcggcgtgtcgccggct
gcggcgcccgcgccggttgctccggcaccggcgaaggaacaagcggcccgcccggctcgc
gagcgtaccgagaagaccgagcagcgcggcggcgatcgcaaccgcaaccgtcgtggcggc
gcgcagcaggtgcaaggcggccgtgaccaggcagcagcaggtcgtggccagccgcagcgc
caggaacgcgaaggcaaggaagcgcgcgaaccgcgtgaaggccgtgagctgcgcgagggt
cgcgaaccgcgtgaaggtcgcgaaaaccgtgaaggtcgtgagggccgcgaaggtcgcgag
ggccgtggccagcgcgaaggtcgcgaaccgcgcgagccgcgtgaaagccgtgagccgcgt
gaaccgcgcgagaaccgcgagccgcgcgagcgcgccgagcagccggaaggcgtcgacgcg
gccggccgtggcgagcgccaggagcgcggtgagcgtcgcgagcgcggcgaacgccgcaag
ccgacccagcatgcggctacgctcgagaccgtcaaccgtggtgaaaaccatccggaaccg
gaagccgacaaggtcgtcgcagaagcgctgcccggcgccgagctggcagccgatgcggaa
gccgtcgcgcgtgacggcgaggaacgccgtcgtcgccgtcgcggccgccgcggcggtcgt
cgcgaacgtgacgaagacggcgcaatcgtcgaccaggccgaacaaggccaggatggcgaa
gccgccgtgcaaaccgtgacgccggaagcatcggcagctgccgaaccggcccacacggcc
gcaccggcagtcgtcgcggccgtggctgcggctggcgccgtcgtcgtcgaggcaaccgtc
gagcagcctgccgcaccggccgctgtcgaagcgcaaccggcaccggtcgaagcggctccg
gccgctccggtcgagcccgccgtcgcggtgcaggcagcagaaccggcaccggtcgcaccg
gccgtcgatacggaagccggtccggctccggtcgcggtttcgccgaccgatgcgttcgaa
gtgcctgcagcaccggcagcagtgccggccgctgtcgaggcgccgcagtccgcgcccgtc
gagcaggtcgcaccggccgtgacgaccgaagccgctccggtggctgtcgaaccggtggct
gtcgaaccggtggctgtcgaaccggtggttgtcgcaccgatgcatgtcgaaccggcaccg
gtcgaggccgttgcagcaccggcaccggctcctgcccctgtccaaccggtagccgcgccc
gcttcggcgagcctggatgtcgtgctggagcaggccggtctcgtctgggtgaacacggac
gccgacaagttcgccgctgcgcaggaagtcgcgtcgcgcctcccgcgtccggcccgcgtg
ccgcgcgaacgcaaggcgctgccgccggccgatacggccccgatgcagcaggtcgaaaca
acgcaccactga
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