Burkholderia pyrrocinia: ABD05_13025
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Entry
ABD05_13025 CDS
T03962
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03420
Nucleotide excision repair
bpyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABD05_13025
03430 Mismatch repair
ABD05_13025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpyr03400
]
ABD05_13025
Enzymes [BR:
bpyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABD05_13025
DNA repair and recombination proteins [BR:
bpyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABD05_13025
MMR (mismatch excision repair)
Other MMR factors
ABD05_13025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AKM01043
LinkDB
All DBs
Position
1:2848236..2850599
Genome browser
AA seq
787 aa
AA seq
DB search
MPDLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTF
TNKAAREMMARLSAMMPIDTRGMWIGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLSA
IKRLMKAANVDDEKYPPKNVQYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQR
EGVVDFPELLLRCYELLAYNAPLRAHYQARFKHILVDEFQDTNKLQYAWLKMLAGGQNAI
FAVGDDDQSIYAFRGANVGNMRDFEDEFRVRNLIKLEQNYRSHGNILDAANQLISNNAHR
LGKNLRTDAGHGEPVRVYEASTDSQEAGWIVEEIRSLINTGMARSEVAVLYRSNAQSRSI
EHTLMSSGIPYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSI
EQLADAARLYDCSMAAAIPYVTGKAGTSLGGFANLVAKMRAETQQMNLPDTVEYVVRASG
LADFYQGEREGQDRLENLQELVNAATAFVAEEGYGLDTPARSIPLRAGAIAAPELGAATD
DPAVEVLDPASPGDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLE
FSAVFITGLEEGLFPHENSVLESDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRY
NVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARPGGGSREQIVDAAVTA
PLPAFADKQRAADAGFRVGQQVFHTKFGEGTVTALEGNGTDAKAQVKFKRHGEKWLALAV
AKLQAVE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatctgctcgccaatctgaaccccgaacaacacgccgccgtcacgttgccgaac
gaaccggcgctgatcctcgcaggggcgggcagcggcaagacccgcgtgctgatcacgcgc
atcgcgtggctgatccagcagggctacgcgtcgccgcccaccgtgctcgccgtcaccttc
acgaacaaggccgcgcgcgagatgatggcgcgcctgtcggcgatgatgccgatcgacacg
cgcgggatgtggatcggcacgttccacggcctgtgcaaccggatgctgcgcacgcactgg
cgcgacgccggcctgccgcagaccttccagatcctcgatacggccgaccagctgtccgcg
atcaagcggctgatgaaggcggcgaacgtcgacgacgagaagtacccgccgaagaacgtc
cagtacttcatcaacaacgcgaaggagcaggggctgcgtcccgacaaggtcgacgcgacc
gacagcttcaaccgcaagttcgtcgagctgtaccaggcgtacgaccagcagtgccagcgc
gagggcgtcgtcgatttccccgagctgctgctgcgctgctacgagctgctcgcgtacaac
gcgccgctgcgcgcgcactaccaggcgcgcttcaagcacatcctcgtcgacgagttccag
gacaccaacaagctgcagtacgcgtggctcaagatgctcgcgggcggccagaacgcgatc
ttcgcggtcggcgacgacgaccagtcgatctacgcgttccgcggcgcgaacgtcggcaac
atgcgcgacttcgaagacgaattccgcgtgcgcaacctgatcaagctcgagcagaactac
cggtcgcacggcaacatcctcgacgcggcgaaccagctgatttcgaacaacgcgcatcgc
ctcggcaagaacctgcgcaccgacgcgggccacggcgagcccgtgcgcgtgtacgaggcg
agcaccgattcgcaggaagccggctggatcgtcgaagaaatccgctcgctgatcaacacc
gggatggcgcgcagcgaagtggccgtcctgtaccgcagcaacgcgcagtcgcgctcgatc
gagcacacgctgatgtcgtcgggcatcccgtatcgcgtgtacggcggcctgcgcttcttc
gagcgccaggaagtgaagcatgcgctcgcgtacctgcgcctgatcgacaacccgaacgac
gacacggcgttcgtgcgggtcgtgaatttcccgacccgcgggatcggtgcgcgctcgatc
gaacaactcgccgatgcggcgcgcctctacgattgctcgatggcggccgcgatcccgtac
gtgacgggcaaggccggcacgagcctcggcgggttcgcgaacctggtcgcgaagatgcgc
gccgagacccagcagatgaacttgccggacacagtcgagtacgtcgtgcgcgcgagcggc
ctcgccgatttctaccagggcgagcgcgaaggccaggaccgtctcgagaacttgcaggaa
ctcgtgaacgcggccaccgcgttcgtcgccgaggagggctacgggctcgacacgccggcc
cgctcgatcccgctgcgcgcgggtgcgatcgcggcgcccgagctcggcgcggcgacggac
gatccggcggtcgaggtactcgatccggcgtcgcccggcgatcccgcgcagaaccccgac
acgatgacgccgctcgccggtttcctgtcgcatgcgtcgctggaggccggcgacaaccag
gcgcaggccgggcaggatgccgtgcagctgatgacggtgcacgcggcgaaggggctcgaa
ttctcggccgtgttcatcacgggcctcgaggaagggctgttcccgcacgagaacagcgtg
ctcgaatcggacggcctcgaggaggagcgccggctgatgtacgtcgcgatcacgcgtgcg
aaggagcggctctacctgtcgttcgcgcagagccggatgctgcacggccagacgcgctac
aacgtgcgctcgcgcttcttcgacgagttgccggagcacgtgctgaagtggctgacgccg
aaggtcgaggccggttcgcgctggggcgggcgttcggacaacgccgggtacgggcgcgac
tggttcgcgcggccgggcggcggcagccgcgagcagatcgtcgacgcggccgtgaccgcg
ccgctacccgcgttcgcggacaagcagcgcgcggccgatgccggtttccgggtcggccag
caggtgttccataccaagttcggcgaaggcacggtcaccgcgctcgaaggcaacggcacc
gatgcgaaggcgcaagtgaagttcaagcggcacggcgagaagtggctcgcgctcgcggtc
gcgaaactgcaggcggtggaatga
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