Burkholderia pyrrocinia: ABD05_18250
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Entry
ABD05_18250 CDS
T03962
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bpyr
Burkholderia pyrrocinia
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpyr03016
]
ABD05_18250
Enzymes [BR:
bpyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABD05_18250
Transfer RNA biogenesis [BR:
bpyr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABD05_18250
Prokaryotic type
tRNA splicing ligases
ABD05_18250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AKM04354
LinkDB
All DBs
Position
2:448664..449887
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AA seq
407 aa
AA seq
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MSNMDYQLMELANGKPVKMWTQGVAVEDEARAQLRNTAQMPFIFRHVAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAARTTLMASDLPDSLAGLRSAIERAVPHGRAPGRR
DPGAWGDRTPAAVTESWKSLLPGFQRIVDKYPKLEKTNHYAHLGTLGTGNHFIEVCVDEA
DHVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDYARRNRQAMMDAVIGAARGVIGKPFAVDEHAVNCHHNYVQRERHFGEDVLVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRAMSRTEAKRRFTADDQAKAT
QGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacatggattatcagttgatggaactggcgaacggcaagccggtgaagatgtgg
acgcaaggcgtcgccgtcgaggacgaagcgcgcgcgcaactgcgcaacaccgcgcagatg
ccgttcatcttccgccacgtcgcggtgatgccggacgtccacctcggcaagggctcgacg
atcggcagcgtgattccgacgaagggcgcgatcattccggccgcggtcggcgtcgatatc
ggctgcgggatgatggccgcgcgcacgacgctgatggcgtccgacctgccggactcgctc
gccgggctgcgcagcgcgatcgaacgcgcggtgccgcacggccgcgcgccgggccgccgc
gatccgggtgcgtggggcgatcgcacgccggccgccgtgaccgaatcgtggaaatcgctg
ctgccggggttccagcggatcgtcgacaagtatccgaagctggaaaagacgaaccactac
gcgcatctcggcacgctcggcaccggcaaccacttcatcgaagtgtgcgtcgacgaagcg
gaccacgtgtggttcatgctgcacagcggctcgcgcggcgtcggcaacgcgatcggcagc
ctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaacctgccggatcgc
aacctcgcatatttcaccgagggcagccggcacttcgacgactacgtcgaagcggtcggc
tgggcgcaggactacgcgcggcgcaaccggcaggcgatgatggacgcggtgatcggcgcg
gcgcgcggcgtgatcggcaagccgttcgcggtcgacgagcacgcggtgaactgccaccac
aactacgtgcagcgcgaacgccacttcggcgaagacgtgctcgtgacgcgcaagggcgcg
gtgtccgcgcagaaggggcagctcgggatcattcctggttcgatgggggcgaagagcttc
atcgtgcgcgggctcggcaacccggaaagcttctgctcgtgcagccacggcgcgggccgg
gcgatgagccgcaccgaagcgaagcgccgcttcacggccgacgaccaggcgaaggcgacg
caaggcgtcgaatgccggaaggacgcgggtgtcgtcgacgaaatcccgatggcctacaag
gacatcgacgcggtgatggcggcccagcgcagcctcgtggaagtcgtgcatacgctgcgc
caggtggtgtgcgtgaaaggatag
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