Burkholderia pseudomallei 1026b: BP1026B_I1301
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Entry
BP1026B_I1301 CDS
T02049
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpz
Burkholderia pseudomallei 1026b
Pathway
bpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BP1026B_I1301 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpz03400
]
BP1026B_I1301 (mfd)
Enzymes [BR:
bpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BP1026B_I1301 (mfd)
DNA repair and recombination proteins [BR:
bpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BP1026B_I1301 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFI65943
UniProt:
A0A0H3HPF2
LinkDB
All DBs
Position
1:complement(1404133..1407660)
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AA seq
1175 aa
AA seq
DB search
MRRAELVRHPAFANQPLVMSDNASPSQSPVALVKAGQRFAFDGTHGSADALVIARYLAAH
RAQVPLLAVICANAVDAQRLAQELAYFAPDARVRVLPDWETLPYDTFSPHQDLVSERLAT
LHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVS
QVVRPGEYCVRGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPG
REFPFDEAARTAFRSRWRETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHY
LPERAQLVFTGDLDAAIKRFTADTKQRYAFLSHDRERPILEPQRLFLSDDDFYLLAKPFA
RIVLPAQPSGGWAAPLPNLALERHADAPLAAFAAYLETTKNRVLFTVESAGRRETIAQLF
AEHHLRPAGSDSFAAWLASDERFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRR
RQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKL
YVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAARE
GHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL
RAAFIAVMGGKQVALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQI
NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI
PRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEV
ETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS
ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL
GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLA
ATTEINLHAPAILPADYCGDVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHA
LVETHRLRLAAKPLGIVKIDASEAAIGLQFVPNPPIDPMRIIDMVQKHRHIKLAGQDKLR
IETRTPDLAVRVSTVKETLRALGQPQQPRAQAAAR
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcgccgagctcgtccgccatccggcgttcgccaaccagccgctcgttatgtca
gacaacgcctccccttcgcagtcccccgtcgcgctcgtcaaggcgggccagcgcttcgcc
ttcgacggcacacacggctccgccgacgcgctcgtcatcgcccgctatctcgccgcgcac
cgcgcgcaggtgccgcttctcgccgtgatctgcgcgaacgcggtcgacgcgcaacggctc
gcgcaggagctcgcctacttcgcgcccgacgcgcgcgtgcgcgtgctgcccgactgggag
acgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcggctcgcgacg
ctgcacgacctcggcgaaggccgctgcgacatcctgctcgtgcccgcgacgacggcgctc
taccggatgccgcccgcgtcgttcctcgccgcgtacacgttctcgttcacgcagggcgag
cggctcgacgaagcgaagctgaaggcgcagctgacgctcgccggctacgagcacgtgagc
caggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctgttcccgatg
ggctcgccgctgccgtaccggatcgatctgttcgacgatcaggtcgactcgatccgcgcg
ttcgatccggacacgcagcgcagcctctacccggtgcgcgacgtgcgcctgctgcccggc
cgcgaattcccgttcgacgaggccgcgcgcaccgcgttccgaagccgctggcgcgagacg
ttcgagggcgacccgagccgcgcgccgatctacaaggacatcggcaacggcgtgccgtcg
gccggcatcgagtattacctgccgctcttcttcgacgagacggcgacgctcttccactat
ctgcccgagcgcgcgcagctcgtgttcacgggcgatctcgacgcggcgatcaagcgcttc
acggccgacacgaagcagcgctacgcgttcctgtcgcacgatcgcgagcggccgatcctc
gagccgcagcgcctgttcctctccgacgacgatttctacctgctcgccaagccgttcgcg
cggatcgtgctgcccgcgcagccgtcgggcggctgggccgcgccgctgccgaatctcgcg
ctcgagcgccacgcggacgcgccgctcgccgcgttcgccgcgtatctcgaaacgacgaag
aaccgcgtgcttttcaccgtcgaatcggcgggccgccgcgagacgatcgcgcaactgttc
gccgagcaccatctgcggccggcgggcagcgacagcttcgccgcgtggctcgcgagcgac
gagcgcttcgcgctcggcgtcgcgcccctcgcgaacggcttcgcggtgccgggcgagggt
tacgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgccgcgcgggacgccgc
cgccaggaacaggcgagcaacgtcgacgcgatggtgcgcgatctgtccgagctgaaggtg
ggcgacccggtcgtccatgcgcagcacgggatcggccgctacatggggctcgtgtcgatg
gatctcggcgaaggcgacaccgagttcctgcatctcgaatacgcgggcgacagcaagctg
tacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgcggacccggacagc
gcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgccgcgccgcgcag
cagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcggcgcgcgag
ggccacgcgttcgggctcgacccgcgcgactacgtgaagttcgccgacagcttcggcttc
gaggaaacgccggaccaggccgcggcgatcgcggccgtgatcggcgacatgacaagcggc
aagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgctg
cgcgcggcattcatcgcggtgatgggcggcaagcaggtcgcgctgctctcgccgaccacg
ctgctcgccgagcagcacacgcagaccttcgccgaccgcttcgcggactggccggtgcgc
atcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaatgcggcgatcgcgcagatc
aacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcggacgtgcag
ttcaagcgcctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtgcgccagaag
gaagcgctgaaggcgctgcgcgcggaagtggacgtgctcacgctgaccgcgacgccgatc
ccgcgcacgctcggcatggcgctcgaagggctgcgcgatttctcggtgatcgcgaccgcg
ccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagcgtgatccgc
gaggcgatgctgcgcgagctcaagcgcggcggccaggtgtacttcctgcacaacgaggtc
gagacgatcgagaaccgcaaggcgatgctcgaggagctggtgcccgaggcgcgcatcgtg
atcgcgcacggccagatgcacgagcgcgagctcgaacgcgtgatgcgcgatttcgtcgcg
cagcgcgcgaacgtgctgctgtgcacgacgatcatcgagaccggcatcgacgtgccgagc
gcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagttgcaccagttg
cgcgggcgcgtcggacgctcgcaccatcaggcatacgcgtacctgctcgtgcacgatccg
caagcgctgacgaagcaggcgcagcgccggctcgaggcgatccagcagatggaggagctc
ggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggcgaagtgctc
ggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacaccgagatgctg
aacgatgcggtgaaggcgctgaagaacggcaaggagccggacctgaccgcgccgctcgcc
gcgacgaccgagatcaacctgcacgcgcccgcgatcctgcccgccgactattgcggcgac
gtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggcgatgcgatc
gacggcatccaggaggagctgatcgaccgcttcggcaaactgccgccgcaggcgcacgcg
ctcgtcgagacgcaccggctgcggctcgccgcgaagccgctcggcatcgtgaagatcgac
gcgagcgaagcggcgatcgggctgcagttcgtgccgaatccgccgatcgatccgatgcgg
atcatcgacatggtgcagaagcaccggcacatcaagctcgcgggccaggacaagctgcgc
atcgagacgcgcacgccggacctcgcggtgcgcgtgtcgacggtgaaggaaacgctgcgc
gcgctcggccagccgcagcagccgcgcgcgcaggcggcggcgcggtag
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