Burkholderia pseudomallei 1026b: BP1026B_I2827
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Entry
BP1026B_I2827 CDS
T02049
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpz
Burkholderia pseudomallei 1026b
Pathway
bpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BP1026B_I2827 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpz03019
]
BP1026B_I2827 (rhlE1)
Enzymes [BR:
bpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BP1026B_I2827 (rhlE1)
Messenger RNA biogenesis [BR:
bpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BP1026B_I2827 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
Ric8
DegT_DnrJ_EryC1
P-loop_SecA
CMS1
Sacchrp_dh_NADP
Cas3-like_C_2
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AFI67414
UniProt:
A0A0H3HM74
LinkDB
All DBs
Position
1:3149885..3151342
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AA seq
485 aa
AA seq
DB search
MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA
KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGAVAGNGGSGNGNSGGAGNGGRGNRA
PRAASQPQAQQGQAAARRDGGTQAKAAKPQQARGGNSRPAGNGNSNGGGAHANRSRSSRS
GQRGR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcatctctcggtctcgccgaaccgctcgtgcgggccgtcaacgagctgggc
tacacgcagcccacgccgatccaggctcaagccattcccgccgtgctgggcggcggcgat
cttctcgccggcgcccagacgggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacgcgttctacgcggagaaccgcagcgcgcgccgcgcggtgcgcgcgctc
atcctcacgccgacgcgcgagctcgccgcgcaggtcgaggaaagcgtgcgcgcgtacagc
aaatacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcgttgaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgaccac
atgcagcagaagacgatcgacgtgtcgagcctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccggcg
aagcgccagaacctgctgttctcggcgaccttctccgacgagatcaagtcgctcgcggac
agcctgctcgattcgcccgcgctgatcgaggtcgcgcgccgcaataccacggccgagacg
atcgcgcagaagatccacccggtcgatcgcgatcgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggtttcaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggcttgccgagcaactgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtccgagttcaagagcagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgatcagttgccgcacgtcgtcaac
ttcgatctgccgaacgttcccgaggactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaggcggtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctcatcaagcgcgagattccgcagcaggtgattccgggcttcgagccggac
ccgaacgcgaagccggagccgatccagcggcgcgggcagcgcggcgccgtcgccggaaac
ggcgggagcggcaacggcaacagcggcggcgcgggcaacggcggccgcggcaatcgcgcg
ccgcgcgcggcaagccagccgcaagcgcagcaaggccaagccgccgcgcggcgcgacggc
ggcacgcaagcgaaggccgccaagccgcaacaggcgcgcggcggcaacagccgcccggcg
ggcaacggcaattcgaacggcggcggcgcgcatgcgaatcgcagccgttcgtcgcgcagc
ggccagcgcggccgctga
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