Bradyrhizobium quebecense: J4P68_0003220
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Entry
J4P68_0003220 CDS
T07890
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J4P68_0003220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bqb03021
]
J4P68_0003220 (rpoB)
03400 DNA repair and recombination proteins [BR:
bqb03400
]
J4P68_0003220 (rpoB)
Enzymes [BR:
bqb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J4P68_0003220 (rpoB)
Transcription machinery [BR:
bqb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J4P68_0003220 (rpoB)
DNA repair and recombination proteins [BR:
bqb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J4P68_0003220 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UGY03800
UniProt:
A0ACD3VBN9
LinkDB
All DBs
Position
complement(618907..623025)
Genome browser
AA seq
1372 aa
AA seq
DB search
MAQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPAGGRLDEGLQAVFRS
VFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKS
VKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDIEFDAKDIVFARIDRRRKLPVTSLMYALGLDGEQILSTFYKKITYKRT
KDGWRVPFDANRFRGYSTVNDLIDADTGKVVLEAGKKLTVRSARQMQEKGLKALRMSDDE
LVGNYLAEDLVNPKTGEIYAEAGEEITEKSLKVLNEQGYKDLPLLDIDHVNVGAYIRNTL
SADKNLTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRLEL
DAPDTHRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPY
RKIKDGRVTDEVVYLSAMEEGRYRVAQANVPLDAKGRFTDDLVVCRHAGEVLPVTPDKVD
YMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD
SGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVK
VGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIH
IEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIEREE
IERLAKDRDDEQAILDRNVYNRLAELLENRQGIAGPKGFKKDTKITRAVLDEYPKSQWWL
FASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGW
ACAGLGKRIGQTIDAYYQKQDLKPLRETLKKIYGEDETIKSLNDNELVELGRNLSHGVPI
ATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDAFDRKVTMGYIYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKVGPAPTSEAAE
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagacattcaccggtcgcaaacgcgtacgcaagtttttcggtcacatcaag
gaagtcgccgagatgccgaacctcatcgaggttcagaaggcatcctacgaccagttcctg
atggttgacgagccggccggcggtcgcctcgacgagggcctgcaggcggtattccgctcg
gtatttccgatctcggatttctccggcacctcgatgctcgaattcgtccgctacgagttc
gaacagccgaagtatgacgtcgacgagtgtcgccagcgcggcatgaccttcgctgcgccg
ctcaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggaaaccggcgccaagtcg
gtgaaggacatcaaggagcaggacgtctacatgggcgatatcccgctcatgacgatgaac
ggcaccttcgtcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcgccc
ggcgtgttcttcgaccacgacaagggcaagacccattcgtccggcaagctgttgtttgcc
gcgcgcgtgattccgtatcgcggttcctggctcgacatcgagttcgacgccaaggacatc
gtgttcgcgcgcatcgaccgccggcgcaagctgcccgtgacctcgctgatgtacgcgctc
ggtctcgacggcgagcagatcctgtcgaccttctacaagaagatcacctacaagcggacc
aaggacggatggcgcgtgccgttcgatgccaaccgcttccgcggttattcgaccgtcaac
gacctgatcgacgccgacaccggcaaggtggtgctcgaggccggcaagaagctgaccgtg
cgcagcgcgcgtcagatgcaggaaaagggcctcaaggccctgcggatgtcggatgatgag
ctcgtcggcaactatctcgccgaggacctcgtcaacccgaagaccggtgagatctacgcc
gaagccggcgaggagatcaccgagaagtcgctcaaggtgctgaacgagcagggctacaag
gacctgccgctgctcgacatcgaccacgtcaatgtcggcgcctatatccgcaacacgctg
tcggccgacaagaacttgacgcgtgaggacgcgctgttcgacatctaccgcgtgatgcgt
ccgggcgagccgccgacgctggattcggcgcaggcgatgttccagtcgctgttcttcgat
gccgagcgctacgacctctccgcggtcggccgcgtcaagatgaacatgcgcctcgagctc
gacgcgcccgacacccatcgcacgctgcgcaaggaagacatcctggcggtcatcaagacg
ctggtcgacctgcgcgacggcaagggcgagatcgacgacatcgaccacctcggcaaccgc
cgggtgcgctctgtcggcgagctcatggagaaccagtaccggatcggcctgctccgcatg
gagcgcgccatcaaggagcgcatgtcgagcgtcgatatcgacaccgtgatgccgcaggac
ctgatcaacgccaagccggcggctgccgcggtgcgcgagttcttcggttcctcgcagctg
tcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcggcgcctctcg
gcgcttggcccgggcggtctgacccgcgagcgtgccggcttcgaagtccgcgacgtgcat
ccgacgcattacggccgtatctgcccgatcgaaacgccggaaggtccgaacatcggtctg
atcaactcgctggcgacgttcgcgcgcgtcaacaagtacggcttcgtcgagacgccctat
cgcaagatcaaggacggccgggtcaccgacgaggtggtctatctgtcggcgatggaagag
ggccgctaccgcgtcgcgcaggccaacgtgccgctcgatgccaagggccgcttcaccgac
gacctggtggtctgccgtcatgccggcgaagtgctgccggtgacgccggacaaggtcgac
tacatggacgtgtcgccgaagcagctggtttcggtcgccgcggcgctgatcccgttcctc
gagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggcggtgccg
ctggttcgcgccgaggcgccgttcgtcggcaccggcatggagggtgtggtcgcccgtgac
tcgggcgcggcgatcgccgcgcgccgctcgggcgtgatcgaccagatcgacgccacccgc
gtcgtgatccgcgccaccgaggatctcgatccgaccaagtcgggcgtcgatatctaccgg
ctgatgaagtaccagcgctccaaccagtcgacctgcatcaaccagcgtccgctggtgaag
gtcggcgacatcgtcaagaagggcgacatcatcgcggacggtccgtcgaccgatctcggc
gagctcgcgctcggccgcaacgtgctggtcgcgttcatgccgtggaacggctacaacttc
gaagactcgatcctgctctccgagcggattgtgaaggacgacgtgtttacctcgattcat
atcgaagaattcgaggtgatggcccgcgacaccaagctcggtcctgaggaaatcacgcgc
gacatcccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtctac
atcggtgcggaagttcgcgccggcgacatcctggtcggcaagatcacgccgaagggcgag
agcccgatgacgccggaagagaagctgctccgcgccatcttcggcgagaaggcctccgac
gtccgcgatacctcgctgcgcgtgcctccgggcgtgcagggcaccatcgtggaagtccgc
gtgttcaaccgccacggcgtcgacaaggacgagcgtgcgctggcgatcgagcgggaagag
atcgagcgtctggccaaggaccgcgacgacgagcaggcgattctggaccgcaacgtctac
aaccgcctcgccgagctgctggagaaccgccagggcatcgccggtccgaagggcttcaag
aaggataccaagatcacccgtgcggtgctcgacgagtatccgaagtcgcagtggtggctg
ttcgcctcgccgaacgacaagctgatggccgagatcgaggccatgcggaagcagtacgac
gagtcgaagaagggcctcgagcagcgcttcctcgacaaggtcgagaagctgcagcgtggc
gacgagttgccgcccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaag
atccagcccggcgacaagatggccggccgtcacggcaacaagggcgtggtgtcgaagatc
gtgccgatcgaggacatgccgttcctcgaggacggtacgcatgccgacatcgtgctcaac
ccgctcggcgtgccttcgcgcatgaacgtcggtcagatccttgagacccatctcggttgg
gcgtgcgccggcctcggcaagcgcatcggccagaccatcgacgcctactatcagaagcaa
gatctcaagccgctgcgcgagaccctgaagaagatctatggcgaggatgaaaccatcaag
tcgctgaacgacaacgagctggtcgaactcggccgcaatctgagccacggcgtgccgatc
gcaacgccggtgttcgacggcgccaaggaagccgacatcgaggagatgctgaagctcgcg
ggcttcgacgcctccggccagtcgaccgtctatgacggccgcaccggcgatgcgttcgat
cgcaaggtgacgatgggctacatctacatgctcaagctgcaccatctcgtggacgacaag
atccacgcgcgttcgatcggtccgtactcgctcgtcacccagcagccgctgggcggcaag
gcgcagttcggcggccagcgcttcggcgaaatggaggtctgggcgctggaagcctacggc
gccgcctacacgctgcaggaaatgctgaccgtgaagtcggacgacgtcgccggccgtact
aaggtgtacgaggcgatcgtgcgcggtgacgataccttcgaggccggcattccggaatcg
ttcaacgtgctggtcaaggaaatgcgctcgctcggcctcaacgtcgacctgcacaattcc
aaggtgggaccggcgccgacgtcggaagcggccgagtaa
DBGET
integrated database retrieval system
