Bradyrhizobium quebecense: J4P68_0015270
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Entry
J4P68_0015270 CDS
T07890
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4P68_0015270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bqb03019
]
J4P68_0015270
03009 Ribosome biogenesis [BR:
bqb03009
]
J4P68_0015270
Enzymes [BR:
bqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4P68_0015270
Messenger RNA biogenesis [BR:
bqb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4P68_0015270
Ribosome biogenesis [BR:
bqb03009
]
Prokaryotic type
rRNA helicases
J4P68_0015270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UGY06007
LinkDB
All DBs
Position
complement(3180083..3182143)
Genome browser
AA seq
686 aa
AA seq
DB search
MPFPTTSSPLARALAERNYDQPTPVQLAVLADDAVDRDLLVSAQTGSGKTVAYGLAMAKD
LLDGAGRFEPAAAPLALIVAPTRELALQVQRELAWLYEHADGRVVSCVGGMDPRREQREL
AAGAHIVVGTPGRLCDHLRRGRLDISGLRVVVLDEADEMLNLGFREDMEFILETTPDTRR
TLLFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIEYRAIRVAADDVEHAVVNVLRF
HEAPSALVFCNTREAVRHLQAALLERGFSVASLSGEMTQNERTQALQALRDGRSRVCVAT
DVAARGIDLPSLDLVIHADLPKDPEVMQHRSGRTGRAGRKGVSILLVPPARRRRAELLLD
LAGIDVVWGSAPQADEIRKLDHDRLLQDAVFSEEMSSDDQVLAQALLAERSPEAIAAALA
RFYRARLPAPEDILDPGEGRSRDRDERRGERTSRRDDRPAGPRSKAGKASPRHGMEEASV
WFRASIGRRKNAEARWLLPMICRRGGIDKHDIGAIKILDTTTEFEIAARVADSFAVKIKR
PDKEDTIRIEPLADAPQRQAPSDKPARKPRHDSWRDKDDGGHSAPRRDEPRDDAAAKRRG
KPAREARAFSSEGVSRSREDHAPRQEPRAAFRFDRDGKGAKPKSGDEPRFGKKKQHRSKS
GQAGHWPDVSAAKPKFGKKPKKKHRG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgccctttccgaccacaagttcgccgctcgcccgcgccttggctgagcgcaactacgat
cagccgacccctgtccagctcgccgtgctcgcggacgacgccgttgaccgtgatcttctc
gtttcggcccaaaccggttcgggcaagaccgttgcctacggattggccatggcaaaggac
ctcctcgacggcgccgggcggttcgagccggcagctgcaccactggcgctgatcgtcgcg
ccgacccgcgagctcgccttgcaggttcagcgcgagctcgcctggctctatgagcatgcg
gacggtcgcgtcgtttcctgcgtcggtggcatggacccgcgccgcgagcagcgcgagctt
gccgcaggcgcccacatcgtggtcggcacgcccggccggttgtgcgaccatttgcggcgg
ggccgtctcgacatttcgggattgcgggtcgtcgttctcgacgaggccgatgagatgctc
aatctcggcttccgcgaggacatggagttcattctcgagaccacgcctgacacgcgccgc
actttgctgttctcggcgacgtttccgcgcggcatcgtcgcgctggccaagcagtatcag
cagcaggcgttccggatcgaggtcgcgggcgacgagggcggccatgccgatatcgagtac
cgcgccatccgggtggcggccgacgatgtcgagcacgcggtcgtcaacgtgctgcgcttc
catgaggcgccgagcgcgctggtgttttgcaacacgcgagaagccgtcaggcatttgcag
gcggcgctgctggagcgtgggttctccgtggcctcgctgtcaggcgaaatgacccagaac
gagcgcacccaggcgctgcaggcgttgcgcgacggacggtccagggtctgtgtcgcgacc
gatgtggcggcgcgcggcatcgacctgccgagcctcgacctcgtcattcatgccgatctg
ccgaaagacccggaggtcatgcagcatcgctcgggccgcaccggccgcgccggccgcaag
ggtgtcagcatcctgctggtgccgccggcacggcggcggcgcgccgagctgctgctggat
ctggccggcatcgatgtggtctggggttctgcgccgcaggcggatgagatccgcaagctc
gaccatgaccgcctgctgcaggatgcggtgttctccgaggagatgagctccgacgatcag
gtgctcgcacaagccttgcttgccgagcggtcgcccgaggcgatcgccgcggcgcttgcc
cggttttatcgcgcgcggctgcctgcgcccgaagacattctcgatcccggcgagggccgg
agccgcgatcgcgacgagcgccgcggcgagcgcacctcgcgccgcgatgatcgtcctgcc
gggccgcgatcgaaggccggcaaggcgtccccgcgtcacggcatggaggaggccagcgtc
tggttccgcgcctcgatcggacgcagaaagaatgccgaagcccgctggctgttgccgatg
atctgtcgtcgcggcggcatcgacaagcacgacatcggcgccatcaagatcctggatacg
accaccgagttcgagatcgctgcgcgggtcgcggattccttcgccgtcaagatcaagcgt
ccggacaaggaagacaccatccgcatcgagccgctggctgacgctccgcagcggcaggcg
ccctcggacaagccggcccgcaagcccaggcacgattcttggcgtgacaaggatgacggc
ggccacagcgcaccgcgccgcgacgagccgcgtgacgacgcggcagccaagcgacgcggc
aagccggcccgcgaggcgcgagcgttttcgagcgaaggcgtgagccgctcgcgtgaagac
cacgcgccaaggcaggaaccgagagctgcgttcaggttcgaccgggacggcaaaggcgcg
aagccgaaatctggcgatgagccaaggttcggaaagaaaaagcagcatcggagcaagtcc
ggccaggccggacactggccagacgtatcggcggcgaaaccgaagttcggcaagaagcca
aagaagaaacaccgcggctga
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