Bradyrhizobium quebecense: J4P68_0023345
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Entry
J4P68_0023345 CDS
T07890
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4P68_0023345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bqb03019
]
J4P68_0023345
Enzymes [BR:
bqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4P68_0023345
Messenger RNA biogenesis [BR:
bqb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4P68_0023345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
SUa-2TM
DUF8086
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UGY00252
LinkDB
All DBs
Position
complement(4903955..4905373)
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AA seq
472 aa
AA seq
DB search
MTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI
LHRLLENRIRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHVRLSSTLAIGGVPMGRQVR
SLMQGVEVLVATPGRLLDLVQSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIR
RQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPTVLAQLL
KQEQVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRTGEIRTLV
ATDIAARGIDVDGISHVVNFDLPNIPETYVHRIGRTARAGADGIAISLVAGAEEMGYLRD
IERLIRITVPREDRRTQGSREAAAPAPATHPHRGGRSAPRAHNVRGNEPAPSAKGPRRRR
RRGGNNGAPQTSRGESPRPSQAGNSEGIQGVAFLHRESRPNPQPNRNNRPKH
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcctttcaggatttcggcctcgccgatcccatcgcccgcgcgcttcgagaagaa
aactatctcacgccgacccccatccaagcccagaccatcccgctcgcgcttgccggccgc
gacgtcgtcggcatcgcccagaccggaaccggcaagaccgcgtccttcgcgctgccgatc
ctgcaccggctgctcgagaaccgcatccgcccgcagcccaagagctgccgcgtgctggtg
ctctcgccgacccgcgaactgtccgggcagatcctcgacagcttcaacacctatggccgc
cacgtccggctgtcctcgacgctcgccatcggcggcgtgccgatgggccgccaggtccgt
tccctgatgcagggcgtcgaggtgctggtcgccacccccggccgcctgctcgacctcgtg
cagagcaacgggctgaagctcaaccaagtcgaattcctggtgctcgatgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccgcaaaatcgtcgccaagctgccgatccgg
cggcagacactgttcttctcggcgaccatgcccaaggacatcgccgagctcgccgaggcg
atgctgcgcgacccggcccgcgtggcggtgacgccggtggcctcgacggtggatcgcatc
gcccagcgcgcgatccaggtcgatttcgcggccaagccgacggttctcgcccagctcctg
aagcaggagcaggtcaatcgtgccctggtgtttacccgcaccaagcacggcgccgacaag
gtggtgaagagccttgccaaggccggcatcgaggccaatgcgatccacggcaacaagtcg
cagaaccaccgcgagcgcacgctggcggcgttccgtaccggcgagatccgcacgctggtg
gcgaccgatatcgccgcccgcggcatcgatgtcgacggcatcagccatgtcgtgaacttc
gacctgcccaacatcccggagacctacgtccaccgcatcggccgcaccgcgcgcgccggc
gccgacggcatcgcgatctcgctggtcgccggcgccgaggagatgggctatctgcgcgat
atcgagcggctgatccggattaccgtgccgcgggaagaccgccgcacgcagggtagccgc
gaggccgccgcgcccgcaccggcgacccacccccaccgtggcggccgctctgcgccgcgc
gcgcataacgtccgtgggaatgagccggctccaagtgcaaaagggcctcgccgccgccgc
cgtcggggtggtaataatggcgcgccgcagacgagccggggcgagtcgccgcgtccgtcg
caggccggcaacagcgaaggcattcagggcgtcgccttcttgcatcgcgagagccggccg
aatccgcaacccaaccgcaacaaccgaccgaagcactag
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