Bradyrhizobium quebecense: J4P68_0030390
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Entry
J4P68_0030390 CDS
T07890
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4P68_0030390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bqb03400
]
J4P68_0030390
Enzymes [BR:
bqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4P68_0030390
DNA repair and recombination proteins [BR:
bqb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4P68_0030390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
SecA_DEAD
Cas3-like_C_2
RecG_dom3_C
AAA_30
AAA_25
UB2H
AAA_22
AAA_16
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
UGY07236
LinkDB
All DBs
Position
6375111..6378215
Genome browser
AA seq
1034 aa
AA seq
DB search
MLALHLLEQWKKSGRDGIVFLAESENRAERLGSVLHSLDPSLEVLVFPRLNTLPFDGLEP
SHEIAGRRSSVLRRLAKSRKPVFLVSTAEAIMERLPLPASWGRLSINLKVGARYSEQDLK
DRLEALGYDLDEEADYPGSVLFHGMTFEVFPAGALGPYRIEHSGGVIRRIAGVDPNEHDV
VFDTQELLIDPMSERIALGGKRAQRAALPDYCPRARWIADAGVAGHADSWLSTIKEAAGR
RETEREYFGPVDWKRLTKRMSALPRKATFTPTPDFSTVASSRKALRAFVADMQRAGSRLV
FVAAVEDDLRAIERMSGVKAERVGGWSEAAKGRGGEAALLADFDTGFIGSGRKPLVVVTA
TDVLGSRAHHPQPMARAWSAAFDHPDVPERGAVVVHLPRGLAVLDGLQTLDMAKGSSREM
IRLEFAGDDAVLVPPADLALIWPYAAERGKLTLDKADGSTWWARRTKAEQEIQLAAKTLA
KHIAQRRRRRAPKLVAPGPAYERFVARFPYFTTVDQAKAIRDVLDDLASGHPMDRVVCGD
VGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFRKRFAPLGIEVGSLSRATSA
AEMKQTKEGLRSGKIKIVVGTQAIASKDVKFAKLSLVIVDEEQHFGAAEKAKLSGLAKSV
HTLWMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPVVTKIAPLSDAAIAAALLREQRRH
GQSFLICPRIQDLDPLLARVQAVAPELRIACLHGKLPADEIDDRMMSFVEGEADVLLATN
IVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAYMLTESNSEQSGKRLAV
LEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPVLYSHLLKQASEKTNDRAAD
LWVPDLNLPLADLLPRSYVQSESMRLEIYGRVARCRSEDDLEDLEEETSRRFGKLPPAGR
DFFTAARLRIDCKRRGIVRLDVGPEAVAATFLPGRLPKSRARSLQRDGDRVFYSGKTNEP
PFERIDDLLDILDE
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgctggcgctgcatcttctcgagcaatggaagaagtccgggcgtgacggcatcgtcttc
cttgcggaaagcgagaacagggcggagcgcctcggcagcgtgctgcattcgctcgatcct
tcgctcgaagtgctggtgttcccgaggctgaataccttgccgtttgacgggctggagccg
tcgcacgagatcgccggcaggcggagctcggtgttgcggcgtcttgcgaagagcaggaag
ccggtcttcctggtgtcgacggccgaggcgatcatggaacggttgccgctgcccgcgagc
tggggccgccttagcatcaacctgaaggtcggtgcgcgctattccgagcaggatctcaag
gatcgtctggaagctctgggatacgatctcgacgaagaggcggactatcccggaagcgtc
ctgttccacggaatgacgttcgaagtgtttcctgccggtgcccttgggccgtacaggatc
gagcattccggtggcgtgatccgcaggatcgccggagtagatcccaacgaacacgacgtc
gtcttcgatacgcaggagctgctgatcgatccgatgtcggaacggattgcgttgggaggc
aagcgagcacagcgggcggcgctgccggattattgcccgcgcgcccgctggatcgcggac
gcgggagttgcaggtcatgccgatagctggctgagcacgatcaaagaggcggccggccgc
agagagacggagcgcgagtacttcggccccgtcgactggaagcgtctgaccaagcgcatg
agtgcgctgcctcgcaaggcgacgttcaccccgacgcccgatttctcgacggtcgcctcg
tcgcgaaaagcgctccgcgcctttgtcgccgacatgcagcgcgccggatcgcggctggtg
tttgttgcggcggtggaggacgacctgcgcgcgatcgagcgcatgagcggggtcaaggcg
gagcgcgtcggaggttggagcgaggcggcgaaggggcggggtggcgaagcggcgctgctg
gctgacttcgataccggcttcatcggttcgggccgcaagccgcttgtcgtcgtcacggcg
accgacgtgctcggcagccgggcgcatcatccgcagcccatggccagagcctggagcgcg
gcattcgatcatccagacgtgccggagcgcggcgcggtcgttgttcatctgccgcgcggg
ctggcggtgctcgatggcttgcaaaccctcgacatggcgaagggatcatcgcgcgagatg
atcaggctggaatttgccggggatgatgccgtgctcgttccgcccgccgaccttgcgctg
atctggccgtatgcggcggagcgcggcaagctgaccttggacaaggcggacggaagcacg
tggtgggcgcgacggaccaaggcggagcaggagattcaacttgccgccaagacgcttgcc
aagcacatcgcgcagcgacgccgccggcgcgctcccaaactggtcgctcccggtcccgca
tacgagcggttcgtcgcgcgctttccatatttcacgacagtcgaccaggcgaaggcgatt
cgggacgtgctggatgatctggcgtcgggtcatccgatggaccgggtcgtctgcggcgac
gtcgggtttggcaagaccgaggttgccttgcgcgcggcggcggccgttgccctgtcaggc
aagcaggttgccgtcgtcgtcccgacgaccgtcctggcaaggcagcacgtcgcgacgttc
cgcaaacggtttgccccgctcggcatcgaagtgggaagcttgtcgcgcgcgacgtcggct
gcggagatgaagcagacgaaggagggcctgcgaagcggaaagatcaagatcgtggtcggc
acgcaggcaatcgcgtcgaaggacgtgaaattcgccaagctgagcctggtcattgtcgac
gaagagcagcacttcggggcggcggagaaggcgaagctttcgggcctggcgaagagcgtc
catacgctttggatgagtgccacgccgatcccgcgcacgcttgcggcaggtctcgccgga
ttcagggacctgagcgtgatcgcatccccgccggtccatcggcttccggtcgtgaccaag
atcgcgccactttcggacgccgccattgccgctgcactgctgcgcgagcagcgacgtcac
gggcaaagcttcctgatctgcccacgcatccaggatctggatccgctgttggcgcgcgtg
caggcggtggccccggagctccgcatcgcttgcctgcatggcaagctaccggccgacgag
attgacgatcgaatgatgagcttcgtcgaaggcgaggccgatgtgctgctggcgaccaac
atcgtggaaagcggtctcgacattccgcgggcgaacaccatcgtggtctgctggccggaa
aagtttggtctggcacagctccaccagctcagggggcgggtgggacgcggtggcacgcgc
gccttcgcgtacatgctgacggaatcgaattcggagcaatccggcaagcgtttggccgtt
ctcgaggagttcagcagaccgggcgccggtttcgcgatcagcgagcgcgatctggacctc
agaggtgccggagatctgctttccgagcggcaatccggccacgtgcaggttttcggaccg
gtgctctacagccaccttctgaagcaggcctcggagaagaccaacgaccgggccgcggat
ctttgggtgcccgatctcaaccttccactcgccgacctgctaccccggagttatgtgcaa
tcggaatccatgcgccttgaaatctatggccgcgtcgcgaggtgccggagcgaagacgat
ctggaagatctggaggaagagacctctcgccgcttcggcaagctgccgccggccggccgg
gatttcttcacagcggcaaggctcaggatcgattgcaagcggcgaggtatcgtgaggctc
gacgtcgggccggaggccgtcgcagcgacgtttctgccggggaggctgcctaaatccaga
gcacgatcgctccaacgcgacggcgatcgcgtcttttactcgggcaagacaaacgaaccg
ccgttcgagcggatcgatgatctgctcgacatcttggacgagtga
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