Bradyrhizobium quebecense: J4P68_0039215
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Entry
J4P68_0039215 CDS
T07890
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4P68_0039215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bqb03400
]
J4P68_0039215 (mfd)
Enzymes [BR:
bqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4P68_0039215 (mfd)
DNA repair and recombination proteins [BR:
bqb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4P68_0039215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UGY03025
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All DBs
Position
8341681..8345199
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQPMKSPAAMLAPGRVLTIANVAEGAEGLVISDLARAIAAQPKRPAVSLAVVCRDGARM
QQLARALEFFAPDIAVMQVPAWDCQPYDRVSPHSGILAQRLTALAKLSRLVGSDKPLIVL
TTVNAAVQRVPARDQVAAQALSVAPGNVVPMDSVVAWLEHNGYTRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRGLDLVPVSEFQLTTETIRRF
RMGYVAAFGAPGRDDQLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGATIAIEPQGE
DAARERFKQIADYYDARREALEHPGSGAIYKPLPPDKLYLSEAEWTRLLGEAPLARLTPF
AVPEGSPDVFDAGARQGRNFAPERADGNVNVFEAVVGHIGALQSQRKKVIVALWSEGSRD
RMGAMLRDHKLLNTTSVNTWRIVQATPRNETMLAVVGMESGFETDEFAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLATGDLVVHVEHGIGRFVGLQTLEVSGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDSANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLH
EAPKFPLQPHVYDEFCARFPYEETEDQLGAINSTLKDLEIGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGRQVAVVVPTTLLARQHSRTFTERFRGFPVNVAQASRLVSTKELNQVKKG
LTDGNVDIVVGTHALLGKAIKFKDLGLLIVDEEQHFGVSHKERLKQLRAQVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIINLKAGVAEPAADRW
SPQITIGMPVLIPEDYVNDLSVRLSLYRRLADLETDDEIDAFAAEMRDRFGVLPDEVRYL
FKVAAIKAYCRRANVGKVDAGPKGAVIAFRDNSFAHPERLVMFIRQHGQAAKVRPDMKVV
FFQDWDTPEERLAGTTEILRQLANLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagccgatgaaatcaccggccgcgatgctcgcgcccggccgggtgctgaccatc
gccaacgtcgccgagggcgccgaagggctcgtcatctccgatctggcgcgcgccatcgcc
gcgcagccgaagcggccggcggtcagcctcgccgtggtgtgccgcgacggcgcgcggatg
cagcagctcgcccgcgcgctggaattctttgcacccgatatcgctgtcatgcaggttccg
gcctgggactgccagccctatgaccgcgtctcgccgcattccggcattctggcgcagcgg
ttgaccgcgcttgccaagctgtcgcggctggtcggcagcgacaagccgctgatcgtgctc
acgaccgtgaatgccgccgtgcagcgggtgccggcgcgcgatcaggtcgcggcgcaggcg
ctgtcggttgcgcccggcaatgtggtgccgatggactctgtcgtcgcgtggctcgaacac
aatggctacacccgctcgtccacggtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctcgatctgtttccggccggcctcgaccagccggttcggttcgacttcttcggcgac
tctctcgagtcgatccgcaccttcgatgccgagacccagcgcacgctgctcgacatgcgc
gggctcgacctcgtgccggtgtccgaattccagctcacgaccgaaaccatccgccgcttc
cgcatgggctatgtcgccgcgttcggcgcgccgggacgcgacgaccagctctatgaggcg
gtctccgagggacggcgccaccccggcatggagcactggctgccgctgttccaggagcgg
atggacacgctgttcgactatctcgacggggcaacgatcgcgatcgagccgcagggcgag
gacgccgcgcgcgagcgcttcaagcagattgccgactactatgacgcgcggcgcgaggcg
ctggagcatccgggcagcggcgcgatctacaagccgttgccgccggacaagctctatctg
tccgaggccgaatggaccaggctgctcggcgaggcaccgctggcgcggctgacgccgttc
gcggtgccggaaggctcgcccgacgtgttcgacgccggcgcgcggcagggccgcaatttc
gcgccggagcgtgccgacggcaatgtcaacgtgttcgaggccgtggtcggccatatcggt
gcgttgcagtcgcagcgcaagaaggtgatcgtcgcgctgtggagcgagggctcgcgcgac
cgcatgggcgcgatgttgcgcgaccacaagctgctcaacaccaccagcgtcaacacctgg
cgcatcgtgcaggcgaccccgcgcaacgagaccatgctggccgtggtgggcatggagtcc
ggcttcgagaccgacgaattcgccgtcatcagcgagcaggacattctcggcgaccgcctg
gtgcgtccgcgcaaggcgagccgcaagctcgacaatttcatctccgaggtgacgagcctt
gcgaccggcgatctcgtggtccatgtcgagcacggcatcggccgcttcgtcgggctgcag
acgctggaagtctccggcgcgccgcatgactgtctcgagctgcattatgccgcggagacc
aagctattcctgccggtcgagaacatcgagctgctgtcgcgctacggctccgacagcgcc
aatgtcgagctcgaccgtctgggcggcggcggctggcaggcgcgcaaggcgaagctgaag
aaccgcatccgcgagatcgccggcgaattgatcaagatcgcggccgagcggcagctgcac
gaggcgccgaaattcccgctgcagccgcatgtctatgacgagttctgcgcgcgcttcccc
tatgaggagaccgaggatcagttaggggccatcaactcgaccttgaaggacctcgaaatc
ggccgcccgatggaccgcctgatctgcggcgacgtcggcttcggcaagaccgaggtggcg
ctgcgcgcggcgttcgccgtcgcgcttgaaggccggcaggtcgcggtcgtggtcccgact
acgctgctagcgcggcagcactcgcgcaccttcactgagcgcttccgcggcttccccgtc
aacgtggcgcaggcgtcgcggctggtgtcgaccaaggagttgaaccaggtcaagaagggg
ctcacggacggcaatgtcgacatcgtggtcggcacccatgcgctgctcggcaaggccatc
aagttcaaggacctcggcctcctgatcgtcgacgaggagcagcacttcggcgtcagccac
aaggagcggctgaagcagctgcgcgcccaggtccatgtgctgacgctgtcggcaaccccg
atcccgcgcacgctgcaactggctttgaccggcgtgcgcgagctctcgatcattgcatct
ccgccggtcgatcgcctcgctgtgcgcaccttcgttgcgccgcacgatcccctgatgatc
cgcgaggcgctgctgcgcgagcgctaccgcggcgggcaggcgttctacgtcgtgccgcgg
atcgaggatctcgccggcgtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gcggttgcccacggccagatgccgccgaccgtgatcgaggacatcatgtccgcgttctac
gacggcaaatacgacatcctgctctcgaccacgatcgttgaatccggtctcgacatcccg
aacgccaacacgctgatcgtgcaccgcgccgacatgtttggtctcgcccagctctaccag
ctgcgtggccgtgtcgggcggtcgaagctgcgcgcctatgcgctgttcacgctgccggca
cagcagaagatcacggcgcaggcggagcggcggctgaaggtgctgcagtcgctggagacg
ctgggcgcgggcttccagctcgcctcgcacgatctcgacatccgcggcgccggcaatttg
ctcggcgaggagcaatcgggccacatcaaggaagtcggcttcgagctgtaccagtcgatg
ctggaggaggcgatcatcaacctcaaggccggcgtcgccgagcccgccgccgaccgctgg
tcgccgcagatcacgatcggcatgccggtcctgattcccgaggactacgtcaacgatctc
agcgtgcggctgtcgctctatcgccgcctcgccgatctcgagaccgacgacgagatcgac
gccttcgccgccgagatgcgcgatcgcttcggcgtgctgccggacgaggtgcgctacctg
ttcaaggtggccgcgatcaaggcctactgccgcagggccaatgtcgggaaggtcgatgcc
ggcccgaagggtgccgtgatcgcgttccgcgacaacagcttcgcgcatccggagcggctc
gtgatgttcatccgccagcacggccaggccgccaaggtgcggccggacatgaaggtggtg
ttcttccaggactgggatacgcccgaagagcggctcgccggcaccaccgagatcctgcgc
cagctcgccaatctcgccgagagcaagaaggctgcataa
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