Bacillus amyloliquefaciens LL3: LL3_01557
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Entry
LL3_01557 CDS
T01835
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bql
Bacillus amyloliquefaciens LL3
Pathway
bql03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bql00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LL3_01557 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bql03019
]
LL3_01557 (rnjA)
Messenger RNA biogenesis [BR:
bql03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LL3_01557 (rnjA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF5548
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AEB63098
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All DBs
Position
complement(1445053..1446720)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQTLGYISCPKNTFIEHNEINRMPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSL
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFKV
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgaccagactgccgttttcgccctcggcggattgggcgagatc
gggaaaaatacgtatggggtgcagtttcaggatgaaattgtactgattgatgcgggaatc
aagtttcctgaagatgaacttctcggcattgattacgtaatccctgattacacgtattta
gtaaaaaacgaagataaaattaaaggtctgtttatcacccacggtcacgaagaccatatc
ggcggtattccgtacctgctcagacaagtaaatattcccgtttacggcggtaaactcgcg
atcggcttacttcggaataaacttgaagagcacgggctgttaagacagaccaaattaaac
atcatcggtgaagatgacatcgttaagttccggaagacgtctgtatccttcttcagaacg
acacacagcattccggattcatacggaatcgtcgtcaaaacaccgccaggcaatatcgta
cataccggggactttaagttcgactttacaccggtaggcgaaccggcaaacctgacaaag
atggccgaaatcgggaaagaaggcgtcttgtgcctgctttctgacagtacaaacagtgag
gtgcccgatttcaccatgtcagaacgccgcgtaggcgaaagcattcacgatattttccga
aaagtggacggcagaattatatttgcgacatttgcttcgaacatacaccggcttcagcag
gtgattgaagcagccgttttaaacggcagaaaagttgccgtattcggacgcagcatggaa
tcggctattgaaatcggacaaactctcgggtacatcagctgtcctaaaaatacgtttatt
gagcataacgaaatcaatcgtatgcctgccaataaagtaacgattttatgtacgggaagc
cagggtgaaccgatggcggcgttatcacgcatcgctaacggcacgcaccgtcagatatcc
attaaccccggagatacggtcgtcttttcttcctctccgattcccggaaacacaatcagc
gtaagccgcaccatcaaccagttataccgtgcgggcgctgaagtcattcacggttcattg
aatgacattcatacatccggacacggcggacaggaagaacagaaattaatgctccgcctg
atcaaaccgaagttcttcatgccgattcacggggagtacagaatgcagaaaatgcacgtc
aaactcgcgactgattgcggcatacctgaagaaaactgcttcatcatggacaatggcgaa
gtgctcgcgctcaaaggagaagaagccgctgttgcaggcaaaattccgtccggctccgtt
tacattgacggaagcggaatcggtgatatcggcaatatcgtgctccgcgaccgccgcatt
ctttcagaagaaggccttgttatcgttgttgtcagcatcaatatggatgactttaaggta
tcagcaggacctgatttaatttcaagaggttttgtatacatgagagaatccggtgattta
atcaacgacgcgcagcagctcatttcgaaccatctggagaaagtaatggatcggaaaaca
acgcagtggtccgaaattaaaaacgaaatcaccgacacgcttgctccgttcctatacgaa
aaaacaaaacgccgcccgatgatccttccgatcattatggaggtctaa
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