Bacillus amyloliquefaciens LL3: LL3_01828
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Entry
LL3_01828 CDS
T01835
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bql
Bacillus amyloliquefaciens LL3
Pathway
bql03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bql00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LL3_01828 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bql03019
]
LL3_01828 (pnpA)
03016 Transfer RNA biogenesis [BR:
bql03016
]
LL3_01828 (pnpA)
Enzymes [BR:
bql01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LL3_01828 (pnpA)
Messenger RNA biogenesis [BR:
bql03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LL3_01828 (pnpA)
Transfer RNA biogenesis [BR:
bql03016
]
Prokaryotic type
tRNA degradation factors
LL3_01828 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AEB63368
LinkDB
All DBs
Position
1700637..1702760
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AA seq
707 aa
AA seq
DB search
MGQEKHVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSV
DQNCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVA
GTKDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDA
ELSEKVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSK
LVKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGAL
GDVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEK
DFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLT
DIQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLS
TLGESRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISS
TDESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERV
GKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAVLREEKEKEQEQQQS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagagaaacatgtctttaccatagattgggccggcagacagcttacagtagaa
accggccagcttgccaaacaggcaaacggcgctgttatggtccgctacggcgataccgca
gtgctcagcacagcaaccgcatcaaaagaaccgaaaccgctagattttttcccgcttacc
gttaattacgaagaaagattatatgcagtaggtaaaattcccggcggctttattaaaaga
gaaggccgtccgagtgaaaaggccgtattagccagccgtctgatcgaccgtccgatccgt
ccgcttttcgccgacggattccgtaacgaagtacaggttatcagtattgtcatgagtgtt
gatcagaactgctcatctgaaatggctgcaatgttcggttcatcacttgctctttgcgtt
tccgatattccgtttgaaggtccgattgcgggtgtgacggtaggccgcattgacggacag
ttcatcatcaatccgacggttgaccagcttgaaaaaagtgatatcaacctcatcgttgca
ggcacaaaagacgccatcaacatggtggaagcgggagcggatgaagttcctgaggaaatc
atgcttgaggcgataatgttcggccacgaagaaattaagcgcctgatcgcattccaagaa
gaaattgtggcggcagtcggcaaagaaaaaaccgaaattgaactgtatgaaattgatgca
gagctcagcgaaaaagtaaaaagtcttgcggagccggatcttctcagcgccattcaggtt
cacgaaaagcatgcgcgtgaagatgcgatcaataaagtgaaagatgcagtcgtcgcgaaa
tttgaagaagaagagcacgatgaagatacgatcaaaaaagtgaaacagacactgtctaaa
cttgtgaaaaacgaagtgcgccgtttgatcacagaagaaaaagtccgtcctgacggccgc
ggtgtcgatcaaatccgcccgctttcttcagaagtcggccttctgccgagaacgcatggc
tccgggctgtttacgagaggacagacgcaggcgctcagtgtttgtacattaggtgctctt
ggcgacgttcagattcttgacggtttaggcgtggaagaatcaaaacggtttatgcatcat
tataacttcccgcaattcagcgtaggggagacaggcccgatgcgcggaccgggacgccgt
gagatcggtcacggggctcttggagagcgtgcgcttgagccggtcattccgaatgaaaaa
gacttcccgtatacggttcgtctcgtatctgaagtgcttgaatcaaacggttccacttca
caggccagcatttgcgcgagcacgcttgccatgatggacgccggtgttccgattaaagcg
cctgttgcgggtatcgcgatgggacttgtgaaatcaggcgagtactatacggtattaacg
gatattcaagggatggaagatgccctcggtgacatggactttaaagtagccggcacggaa
aaaggcgtgacagcgctgcaaatggacattaaaattgaaggcctttcaagagaaattctt
gaagaagcgcttcagcaggcgaaaaaaggaagaatggaaatcttgaacagcatgctcagc
acgcttggtgaatcaagaaaagaactttctcaatatgcgccgaaaatcttaacgatgaca
attaatccggataaaatccgtgacgttatcggaccgagcggcaaacaaatcaacaaaatc
attgaagataccggtgttaaaattgacattgaacaagacggcaccatctttatttcttct
actgatgaaagcagcaaccaaaaagcgaaaaaaatcatcgaagatcttgtcagagaagtc
gaagtcggccagctttacctcggtaaagtcaagcggattgagaaattcggcgctttcgtt
gaaatcttcagcggaaaagacggtctcgttcacatctctgaacttgcgctcgaacgggtc
ggcaaagttgaggatgttgtgaaaatcggtgacgaaatccttgtgaaggtaactgaaatc
gacaaacagggacgagtcaacctgtcgcgtaaagcagtgctgcgcgaagagaaagaaaaa
gaacaagaacaacaacaatcttaa
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