Bacillus amyloliquefaciens LL3: LL3_02836
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Entry
LL3_02836 CDS
T01835
Symbol
yrrC
Name
(GenBank) putative exonuclease with DNA/RNA helicase motif
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bql
Bacillus amyloliquefaciens LL3
Pathway
bql03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bql00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LL3_02836 (yrrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bql03400
]
LL3_02836 (yrrC)
Enzymes [BR:
bql01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LL3_02836 (yrrC)
DNA repair and recombination proteins [BR:
bql03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LL3_02836 (yrrC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
HHH_5
AAA_22
UvrD_C
T2SSE
AAA_12
nSTAND3
AAA_16
DEAD
NPHP3_N
AAA
NTPase_1
AAA_28
Rad17
AAA_17
Zeta_toxin
TsaE
ABC_tran
AAA_18
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AEB64368
LinkDB
All DBs
Position
complement(2652719..2655097)
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AA seq
792 aa
AA seq
DB search
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDE
TYTFYGKTATHPKFGLQFQAEHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGD
GALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQIMISLNQYGFGPQLSMKIYQA
YETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYA
EQNVAKRVLDIAAQTEYADQFPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLL
TGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPVLLAAPTGRAAKRMSESTGLP
AVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTK
DRSFIRCNSAQIKEVVDQVVSNALKKGYTSRDIQVLAPMYRGKAGINELNILLQDIMNPP
KEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIVSIFYAKENTEKEDMVVVSFD
GNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGME
GITPFDFMEEKA
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagctgaaaatcgaggaacaaccgtatgtaaaaggcgttattcatacggtcatt
taccacaatgacaccaacctgtatacagtgctgaaggtcaaggttgcagaaacgtctgag
gcgatcgaagacaaggtcgtatccgtaacgggctacttccctctgctgcaagaagatgag
acttacacattttacggaaaaaccgccacacatcccaagttcggcctgcaattccaggct
gaacactttaaaaaagaaattccgaccaccaaagaagggatcattcactatttatcaagt
gatctgtttgaaggaatcggaaaaaaaacggcggaagaaatcgtcaaaaagcttggagac
ggcgcgctgaataaaattctggctgatgcgtcggtgctttacgatgtgccgaaaatgtcc
aaaaagaaagcggataagcttgccggagagctgcagcggcatcaggggctggagcagatt
atgatttctcttaaccaatacggtttcggacctcagctttccatgaaaatttatcaagct
tacgaaacggaaacccttgagaaaattcaggagaatccttatcagcttgtaaaggacgtg
gaaggcatcggctttgtaaaagccgacgagctgggcggaaaaatgggtctgtcagggaac
catcccgagcggatcaaagcggcgatcttatatacgattgaatcgacctgcctttcagaa
ggtcatacttacatagacacaaagcagctgattatcaatacgcaaacgctactgaatcag
tcagctgacggaggccgcgtcacggaaatggatgcggctgacggcatcatcgccctcgga
gagagtaaggacatcgtcatagaaggagaccgctgctattttccgtctttgttttacgcg
gaacaaaatgtcgcaaaacgcgtgctcgacattgcggctcagacggagtatgccgatcaa
tttcctgaatcggaatttctgcttgcgctcggcgaactggaagaacggatgaaagttcaa
tacgctccgagccaaaaggatgccattcaaaaagcgctgtcgtcgccgatgcttttactg
accggaggaccgggtacgggaaaaacgaccgttatcaaaggaatcgtggaattatacagt
gaactccacggcgtatcgcttgatcccggtgattataaaaaagacgaggcgtttccggtg
ctgcttgccgcgccgaccggaagagccgcaaaacggatgagcgaatctacgggtctgcct
gctgttacgattcacaggctgctcggctggaatggcgctgaaggctttacctacaatgaa
gatcagccgattgaagggaaactgatcattatagacgaagcgagtatgctcgatatttgg
ctcgccagccatttgtttaaggcgctccctaagcacattcagctcatcgtcgtcggtgat
gaagatcagcttccttccgtggggccggggcaggtgctgagagaccttttggcttctgag
gtgctgccgacagtgcgcctgacagatatttaccgtcaggcggaagggtcatccatcgtc
gaacttgctcatgatatgaaaaaaggattgcttccaaaaggactgaccgcgccgacaaaa
gaccgctcatttatccgctgtaattctgcacagattaaagaagtcgtcgatcaagtcgtt
tcaaacgcgttaaagaagggatatacctccagagatattcaagtgcttgcgccgatgtac
aggggaaaagcgggaattaacgagctgaatatacttcttcaagacatcatgaatccgccg
aaagaaaaaaggcgggagctgaaattcggagatgtcgtctacaggacgggcgataaaata
ttgcagcttgtcaaccagccggaaaacaatgtgtttaacggtgatatcggcgaaatcgtg
tccattttttatgccaaagaaaatacggaaaaagaagacatggtcgtcgtctcgtttgac
ggtaatgaaatcacctttacgaaaaaggatttcagccagtttacccatgcttactgctgt
tccatccacaagtctcagggaagtgaatttccgattgtcgtcctgcctgttgtcaaaggc
tactatcgaatgcttaggagaaatctcctttataccgccattacaagggccaagaaattt
ctgatcctttgcggagaagaagaagcgcttgaatggggcgtcaaaaacaatgatgccacc
gtcagacagacgtcgcttaaaaacaggctcacagagcagactgaagagatggatgcagaa
ctggccgctctgcaaaaagaactgccgttcagtgtatatgatgccaacatcggaatggaa
ggcattacgccgtttgactttatggaagaaaaagcgtaa
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