Bartonella quintana RM-11: RM11_0722
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Entry
RM11_0722 CDS
T02294
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bqr
Bartonella quintana RM-11
Pathway
bqr03030
DNA replication
bqr03430
Mismatch repair
bqr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bqr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RM11_0722
03430 Mismatch repair
RM11_0722
03440 Homologous recombination
RM11_0722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bqr03032
]
RM11_0722
03400 DNA repair and recombination proteins [BR:
bqr03400
]
RM11_0722
Enzymes [BR:
bqr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RM11_0722
DNA replication proteins [BR:
bqr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RM11_0722
DNA repair and recombination proteins [BR:
bqr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RM11_0722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Glyco_transf_43
Yopt
Motif
Other DBs
NCBI-GeneID:
13563595
NCBI-ProteinID:
AFR26444
LinkDB
All DBs
Position
complement(901513..905001)
Genome browser
AA seq
1162 aa
AA seq
DB search
MSEDRSKIRDDTNSLPRFIHLRVHSAYSLLEGALKVPQIIQHAISDAMPAVAITDTNNLF
GALEFSQHCFSHGIQPIIGCQLTIDFGDGNDNPRFVKWRHPFDFCSIVLLAASKIGYAHL
VRLVSRAYLDKCDTDPPHIKADWLLSQSEGIIALTGGRGGPINFCLAEDKKARAVERLIY
LKKVFNDRLYVELQRHGSFDRKVETALIELAYAHEIPLVATNEAFFLNRKGYEAHDALMA
VAEGQIVSNPDRKRVTPDHYLKPQDEMVALFSDLPEALENSVEIALRCHTATPIRKPILP
RFIEQSVDSNFALEEEDSELLNQAKDGLKRRLETIGLAEGYTIADYQKRLDYEISVITRM
QFSGYFLIVSDFIKWAKVHDIPVGPGRGSGAGSLVAYALMITDVDPLRFSLLFERFLNPD
RISMPDFDIDFCQERREEVIHYVQKRYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQ
VDYLTKLVPAAPGNQVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAA
GIVIGDRPLSELVPLYRDPRSNMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVA
RKGIKIDLSHIPLNDEATYAMMARGETVGVFQVESSGMRKALIGMRPDRIEDIIALVALY
RPGPMENIPIYNARKHGEEEIASIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLGEA
DLLRRAMGKKIHEEMQKQRTRFVNGAVAGGVDKEQANIIFDLLAKFADYGFNKSHAAAYA
IISYQTAYMKAHHSVEFLAASMSYDMTNTEKLNDFRREALRLGIEVIAPCVQTSHRLFEV
GKNCIYYSLAAIKGVGEAVVDHIVACRGNKVFKDLKDFCERIDPRIVNKRAMESLVCAGA
FDCFNIAREVLLASVGTLHARALRIFDNNFSGQVDMFGIAGGLKEPLILSQASPWSPAEK
LYREFQAIGFYFSAHPLDEYQAILAKKRIQTWVNFANAVKGGATVARLAGTVVAKQVRKT
KSGKKMGIVHFSDTSGQYETILFSEMLAAYEDMLEPGKSFIITVSAENRSEGVSLRLETA
QSLENEAAQHHKMMRLFIKTVDMLPQIEQNLNPNGNGEVGLILIQEDGLREVEITLPKRY
KVDSSVVSAMKSIHGVVDVELT
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaggatagaagtaaaatacgagatgatacgaattctcttcctcgttttattcat
ttgagggtacactcagcttattccctccttgagggggctttgaaagttccacaaattatt
caacatgcaatttctgatgctatgccagcagttgctattacggatacgaataatttattt
ggtgctttagaattttcgcagcattgtttttctcatggtattcaacctataataggctgt
cagctcacaattgattttggcgatggaaatgataatccacgttttgttaagtggcgtcat
ccttttgatttttgctctattgttttattggctgcgagcaagattggttatgctcattta
gttcgtcttgttagtcgtgcttatcttgataagtgcgatactgatcctcctcatatcaaa
gccgattggttgttgtcgcagagtgaaggaataatcgctttgactggtgggagaggagga
cctatcaatttttgtttggcagaagataaaaaagcacgcgctgttgaacgcttaatttat
ttgaaaaaagtttttaatgatcgtctttatgtggaattacaaagacatggctcttttgat
cggaaagtagaaactgcgcttattgagttggcttatgcacatgaaattcctcttgttgca
acgaatgaggctttttttctgaataggaaagggtatgaggctcacgatgctttgatggcg
gttgctgaaggacaaattgtctctaatccagatcgtaaacgtgtgacaccagatcattat
ttgaagccacaagatgaaatggttgcactgttttctgatcttccagaagctttggaaaac
agcgtagaaattgcactgcgttgccatactgctacgccaattcgaaaaccaattttgcct
cgttttatagaacaatctgtagattcaaattttgctttagaggaagaagacagtgaattg
ttaaatcaggctaaagatggtttaaaaaggcgacttgagacaattggattagccgaagga
tacaccattgcagattaccagaaacgacttgattatgaaatttcggttattacgcgtatg
caattttctggctactttcttatcgtttcggattttataaaatgggcgaaagtccatgat
attcctgttggtccaggccgtggttctggtgctggttcacttgttgcttatgcattgatg
attaccgatgttgatccattgcgtttttctcttctctttgagcggtttcttaatccagat
cgtatttctatgccggattttgatatcgacttttgtcaggaacggcgcgaagaagttatt
cattatgttcaaaaaagatatggacgtgatcaagttgctcaaattattacattcggtaag
ttgcaggcccgtgcagtgttacgtgatgttgggcgtgttttagaagtgccttatcgtcag
gtagattatcttacaaagttagttccagctgcacctggaaaccaagttgaattggctgat
gctattaaggatgaaccgaaatttgaagaagaaaagaaaaaggatcctgccattggacgc
acattagatatagcgcttcagttggagggactttatcgtcatgcatcgacccatgctgca
gggattgttatcggtgatcggccgctatcagagcttgtcccattgtatcgtgatcctcgt
tccaatatgcctgttacacaatttaacatgaaatatgttgaacaggctggcttggtaaag
tttgattttcttgggctgaaaacgcttactgttttgaaaatggcggtagattttgttgca
cgaaagggtatcaaaatagatttgtcacatatccctctgaatgatgaagcaacttacgct
atgatggcacggggtgaaacggttggtgtgtttcaagtcgaaagttctgggatgcgtaag
gcgcttattgggatgaggccagaccgtattgaagatattattgcacttgttgcgctttat
cgtcctggtccgatggagaatattccaatctataacgcacgcaaacatggggaagaggaa
attgcttctattcaccctaaaatagatcatctcgttaaagaaacacaaggtgttattgtg
tatcaagaacaggtgatgcagatcgctcaggtgcttgctgggtattcgcttggagaagcg
gatttattgcgtcgtgctatgggtaaaaagattcacgaagaaatgcaaaaacagcggacg
cgctttgtgaatggagctgttgctggtggtgttgataaagagcaagctaatattatcttt
gaccttttagcaaaattcgcagattacggttttaataaatcacatgctgctgcttacgcc
attatatcttatcaaacagcttatatgaaggcacaccattcagttgagtttttagctgct
tcgatgtcatatgatatgacaaataccgagaaattaaatgatttccggcgcgaggcatta
aggttgggtattgaagtaattgcgccttgtgtgcaaacatcacatcgtctttttgaggtc
ggtaaaaattgtatttactattctcttgctgctattaaaggtgtgggggaagcagtcgtt
gatcatatcgtagcttgccgtggaaataaggtttttaaagatttaaaggatttttgtgag
cgcattgatccgcgtattgttaataagcgtgccatggaaagtttggtttgtgctggcgct
tttgattgctttaatattgcgcgtgaggttttattggcgagtgttggaactcttcatgcg
cgtgcacttcgtatttttgataataattttagtggacaagttgatatgtttggaatagct
ggtggcttgaaagagcctttgattctatcgcaagcatctccttggtcaccggctgagaaa
ctttatcgagaatttcaagcaataggtttttacttttctgctcatcctctggatgaatat
caagctattcttgctaaaaaacgtattcagacttgggttaattttgctaatgccgtcaaa
ggaggagcaactgttgctaggcttgctggaactgtcgtagcaaaacaagtgcgcaaaaca
aaatctggtaaaaaaatggggattgttcatttttctgatacgagcggacagtatgagaca
attttattttctgagatgcttgcggcttatgaagatatgctagaaccaggaaaatctttt
atcattacggtgagtgcagaaaatcgctctgagggggttagtttgcgacttgagacggct
caatctttggaaaatgaagcagcacagcatcataaaatgatgcgcctctttataaaaaca
gttgatatgcttccacaaattgagcagaatctaaatcctaatgggaatggagaggtaggg
ctcattttgattcaagaagatggattacgggaagtcgaaattacacttccaaagcgatat
aaggtagattcaagtgtggtgagtgctatgaaatcgatacatggtgttgttgatgtggag
ttgacttaa
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