Bradyrhizobium sp. ORS 278: BRADO0113
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Entry
BRADO0113 CDS
T00516
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
bra
Bradyrhizobium sp. ORS 278
Pathway
bra02020
Two-component system
bra02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BRADO0113 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BRADO0113 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bra03021
]
BRADO0113 (rpoN)
Transcription machinery [BR:
bra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BRADO0113 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
CAL74084
LinkDB
All DBs
Position
complement(126924..128564)
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AA seq
546 aa
AA seq
DB search
MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLSTFVEEELERNPLLERANDGPEAPV
AGEQQMAERGEFSEGGEASGDDFGDGAGSSGGESYESAPEDWMSRDLGSRTEIEQTLDTG
LDNVFSEEPAEAAARNAQDAAPTTYTEWGGGASGDEDYNLEAFVAAETTLSDHLAEQAAV
AFVSPADRMIGQYLIDLVDEAGYLPVDLGQAADRLGAEQADVDAVLGVLQTFDPPGICAR
NLSECLAIQLRELDRYDPAMQALIEHLDLLAKRDFAALRRLCGVDDEDLVDMIGEIRRLD
PKPGLKFGTTRTQTMVPDVYVRPGPDGGWLVELNSDTLPRVLVNQVYYSELSKTIRKDGD
KSYFTDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADAIQ
MHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHHIKQLIDAEDPS
AILSDDTIVEKLRAAGIDIARRTVAKYREAMRIPSSVQRRRDKQSMLAHALSSPASADRT
RDTASV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgacgcagagactagaattccgccagtcacagtcgctggtgatgacgccgcag
ctgatgcaggcgatcaagctgctgcagctgtccaacctcgacctctccacgttcgtcgaa
gaagagctcgagcgcaatccgctgctcgagcgcgcgaacgatggcccggaagcgccggtc
gccggcgagcagcagatggccgagcgcggcgagttctccgaaggcggcgaagccagcggc
gatgattttggcgatggcgcgggcagcagcggcggcgagagttacgagagcgcgcccgag
gactggatgagccgcgatctcggctcgcgcacggagatcgaacagacgctcgataccggg
ctcgacaacgtgttctccgaggagccggcggaggccgcggcgcgcaatgcgcaggacgcc
gcgccgaccacctacacggaatggggcggcggcgcctccggcgacgaagactacaacctc
gaagccttcgtcgcggcggaaaccacgctgtcggatcatctcgccgagcaggccgcggtc
gccttcgtctcgccggccgatcgcatgatcggccagtacctgatcgatctcgtcgacgag
gccggctatctgccggtcgatctcggccaggccgccgaccgtctcggcgccgagcaggcc
gatgtcgatgcggtgctcggcgtgctgcagaccttcgatccgcccggcatctgcgcgcgc
aatctgagtgagtgtcttgcgatccagctgcgcgagctcgatcgctacgatccggcgatg
caggctctgatcgagcacctcgacttgttggcgaagcgcgatttcgccgcacttcgcagg
ctgtgcggcgtcgacgacgaggacctcgtcgacatgatcggcgagatccgcaggctcgat
ccgaagcccggcctcaaattcggcaccacgcgcacgcagaccatggtgcccgacgtctat
gtgcgtccgggcccggatggcggctggctggtcgagctcaacagcgacacgctgccgcgc
gtcctggtgaaccaggtctattactccgagctgtcgaagacgatccgcaaggacggcgac
aaatcctacttcaccgattgcctgcagaacgcgacgtggctggtgcgcgcgctcgaccag
cgcgcgcgcacgatcctgaaggtcgcgaccgagatcgtgcggcagcaggacggcttcttc
actcatggcgtcgcacatctccggcccttgaacctgaaggccgttgcggatgcgatccag
atgcacgaatcgacggtgtcgcgcgtcaccgccaacaaatacatggcgaccaatcgcgga
accttcgagctgaaatatttcttcaccgcttcgatcgcctcggccgatggcggcgaggcg
cattcagccgaagcagtgcggcatcacatcaagcaactgatcgatgcggaagatccctcc
gcaattctctccgacgataccatcgtcgagaagctgcgcgctgccggcatcgacatcgcc
cgccgcacggtcgcgaaataccgggaggcgatgcggattccgtcgtcggtccagcgccgc
cgcgataagcagagcatgctggcccatgccctgtcgtcgcctgccagcgccgaccgcacc
cgggataccgcgtcagtttga
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integrated database retrieval system