KEGG   Bradyrhizobium sp. ORS 278: BRADO0197
Entry
BRADO0197         CDS       T00516                                 
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bra  Bradyrhizobium sp. ORS 278
Pathway
bra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BRADO0197 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bra03021]
    BRADO0197 (rho)
   03019 Messenger RNA biogenesis [BR:bra03019]
    BRADO0197 (rho)
Transcription machinery [BR:bra03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BRADO0197 (rho)
Messenger RNA biogenesis [BR:bra03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BRADO0197 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 S1CSD-TOTE-2 AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: CAL74162
LinkDB
Position
complement(211749..213014)
AA seq 421 aa
MREIKLQDLKSKTPAELVSFAEENGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDERFRLELEDPTRKDLSPRVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAA
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
IDIARSGTRKEELITEPQNLKKMYVLRRILNPMGTMDAIDFLLDKLRSTKSNAEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatcaaactccaggacctcaagtcaaagacgccggccgagctcgtctccttc
gcggaggagaatggggtcgagaatgccagcacgatgcgcaagcaggagctaatgttcgcc
atcctcaagcagctcgccatccaggaaaccgacatcatcggtgagggcgtcgtcgaggtt
ctgtccgacggcttcggcttcctgcgttcgcccgacgccaactacctgccgggccccgac
gacatctacgtctcgccctcgcagatccgccgcttcggcctgcgcaccggtgacaccatc
gagggtcacatccgtagcccgaaggaaggcgagcgctatttcgcgctgctcaaggtcaac
acgctgaacttcgaggatcccgagaagtccaagcacaaggtcaatttcgacaatctcacg
ccgctgtttccggacgagcgcttccggctcgaactcgaggatcccacccgcaaggatctg
tcgccgcgcgtcatcgacatcgtcgcaccgatcggcaagggccagcgcgcgctgatcgtc
gcgccgccgcgcaccggcaagacggtgctgatgcagaacatcgcgcattcgatcaccgcc
aatcatcccgagtgctatctgatcgtgcttttgatcgacgagcgtcccgaggaagtcacg
gacatgcagcgctcggtcaagggcgaggtcgtgtcctcgaccttcgacgagccggccgcg
cgtcacgtccaggtcgcggagatggtgatcgagaaggccaagcgtctggtcgagcacggc
cgcgacgtcgtcattctcctggattcgatcacccgtctcggccgcgcctacaacacggtc
gtgccgtcttccggcaaggtgctgaccggcggtgtcgacgccaatgcgctgcagcgcccg
aagcgcttcttcggtgccgcccgcaacatcgaggaaggtggctcgctgaccatcatcgct
accgctctggtcgacaccggcagccgtatggacgaggtcatcttcgaagagttcaagggc
accggtaactccgaactcattctcgaccgcaaggtcgccgacaagcgcaccttcccggcg
atcgacatcgcccgctccggcacccgcaaggaagagctcatcaccgagccgcagaacctc
aagaagatgtacgtcctccgccgtatcctcaacccgatgggcaccatggacgcgatcgac
ttcctgctcgataagctccgcagcaccaagagcaatgccgagttcttcgagtcgatgaac
acctga

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