Bradyrhizobium sp. ORS 278: BRADO2887
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Entry
BRADO2887 CDS
T00516
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bra
Bradyrhizobium sp. ORS 278
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bra03016
]
BRADO2887
Enzymes [BR:
bra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BRADO2887
Transfer RNA biogenesis [BR:
bra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BRADO2887
Prokaryotic type
tRNA splicing ligases
BRADO2887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
HTH_17
Motif
Other DBs
NCBI-ProteinID:
CAL76696
LinkDB
All DBs
Position
3089035..3090375
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AA seq
446 aa
AA seq
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MRADPYQERARQLAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVA
SRPQAARYQNSPLKVFGSHEDATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAVRLDTQFSAIEDQVGTIIKDVSKVISFGVGRKNAERVEHELF
DDADAWRASDMDAYRQKAVGQLGTVGSGNHYVDLMRDEDGSVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTD
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASL
YSTVHGAGRLFGRREAKRRFTRAEMDAWLQSRGVTLVGADLDESPMAYRRLPEVLAEHAG
SVKVMHTLRPFAVAMAGEGEFDPFKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagagcggatccctatcaggagcgtgcgcggcagctggcgatcgaagccggcctcgat
ccggatgcgcggatcgagcggcccgggcagcgctcgatgccgctgtggtgcacgttccgc
gatgcggcgcgcaaggagcagctcgcgcgcgaggccgaggcgctggccgatacggtcgcg
agccggccgcaggcggcgcggtatcagaacagcccgctgaaggtgttcgggagccacgag
gatgcgacgatcgcccagatgcgcaactgcatgagcgttggcaacgctgtcgccggcgtg
atctgtgccgacggtcatctcggctatgcgcagcctgtcgggggtgtgatcgcctatgag
aagcagatcagcatctccggcgtcggcttcgacatcggttgcggcaacatggcggtgcgg
ctcgacacccagttcagcgcgatcgaggaccaggtcggcacgatcatcaaggatgtgtcg
aaggtgatatcgttcggcgtcggccgcaagaacgccgagcgcgtcgagcatgagctgttc
gatgatgccgatgcttggcgtgcgtccgacatggatgcgtaccggcagaaggcggtcggg
cagctcggcacggtcggctcgggcaaccattatgtcgacctgatgcgcgacgaggacggc
tccgtctggatcggcgtgcatttcggtagccgtggtctcggccacacctcggcgacgcgc
tacctcaaggcggccggcggcaaggacggcatgaacgtgccgcccgctgtcgtcgacgag
gactccgaggtcgggcagcgctacatcgccgcgatgcagctcgccgggcgctacgcctat
gcgggtcgcgagtgggtagtggagcgcgttcgccagatcatcggcggtgcggtcaccgac
agcgtgcacaaccaccataactacgcatggcgtgagacccacgacggacgtgacctgtgg
gtggtgcgcaagggcgccacgccggcatttccgggccagcgcggcttcgtcggcggctcg
atgggcgacgacgccgtcatcatcgagggcgtggagtcggaggaggccaaggcttcgttg
tactccaccgtgcacggagctggtcgcttgttcggccggcgtgaggcgaagcgacgcttc
acccgcgccgagatggacgcgtggctgcagagccgcggcgttaccctggtgggtgccgac
ctcgacgagagcccgatggcttatcgacgcctgcccgaggtgctggccgagcatgcaggc
tcggtgaaggtcatgcatacgcttcggccgttcgccgtggcgatggcgggcgagggcgag
ttcgatccgttcaaggattga
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