Bradyrhizobium sp. ORS 278: BRADO3055
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Entry
BRADO3055 CDS
T00516
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bra
Bradyrhizobium sp. ORS 278
Pathway
bra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BRADO3055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bra03021
]
BRADO3055 (rpoC)
03400 DNA repair and recombination proteins [BR:
bra03400
]
BRADO3055 (rpoC)
Enzymes [BR:
bra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BRADO3055 (rpoC)
Transcription machinery [BR:
bra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BRADO3055 (rpoC)
DNA repair and recombination proteins [BR:
bra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BRADO3055 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF2130
Motif
Other DBs
NCBI-ProteinID:
CAL76858
UniProt:
A4YSI2
LinkDB
All DBs
Position
3255959..3260158
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLRGLELEKLEQTLRAEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGMPGQGMTFGNMAELEHALH
AKAIHLHSKIKYRWEGMNEEGKIAKRWIETTAGRVMLGNLLPKHPRVTFEVINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPAGKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKASEEIAKEMMKEISVTKKTATGADADINSIYM
MSHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTHLGIKMRAIVDAGTLVASLGSRILGRVP
CDDVRDPATNAVLVKAGTLMEESHIDAIQQAGVQEVKIRSALTCELVNGICKMCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFEGKVVIRNKAI
ARNSEGHLIAMVRNMVVTIVDPDGTERATHRIQYGSRMHVDDGDMIKRGQRIAEWDPYTR
PILTEAEGTIGFEDLTEGLSISETLDESTGIAKRVVIDWRGTRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDIGATVKPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIAGTIRFGRDYKNKRRISIEPVDKTEEAREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEV
TDQGDTDMIAGEQVDKIEFDALNAKAQEEGKKPASGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTGASMARIREVALKRDKLILDEREKQ
AAIVPSQPEPQPLALPPAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaatccgacgactccggctcaggtcttcgaccag
atccggatctcgatcgcatcgccggaaaagattctgtcctggtcctacggcgagatcaag
aagccggaaacgatcaactaccgcaccttcaagccggagcgcgacggtctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtgacgctgtcgcgcgtccggcgc
gagcgcatgggccacatcgagctcgccgcccccgtcgcgcacatctggttcctgaagtcg
ctgccgtcgcgcatcggcctcctgctggacatgacgctgaaggatctcgagcggatcctg
tacttcgaatactacgtcgtcctcgagccgggtctgaccgcgctcaaggaccggcagctg
ctgtccgaggacgaatacctcaaggcgcaggacgaatacggccaggacagcttcaccgcc
atgatcggcgccgaggccatccgtgagctgctgcgcggcctcgagctggagaagctcgag
cagacgctgcgtgccgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaggccttccgccactccggcaacaagccggaatggatgatc
atgaccgtcgttccggtgatcccgccggatctgcggccgctggtgccgctcgatggcggc
cgcttcgcgacctcggatctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgcgcgccggatatcatcatccgcaacgagaagcgcatg
cttcaggaggcggtggatgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgttgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtcgtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcacggctcgacgccaagggcctgtcgaccaccgtcaagcaggccaag
aagctggtcgagaaggagcgtccggaggtctgggacatccttgacgaggtcatccgcgag
catccggtgctgctgaaccgcgcgccgacgctgcatcgcctcggcattcaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctgcatccgctggtctgctcggccttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagcca
atcatcgtgccgtcgcaggacatcgttctcggcctctactacgtctcgatcatgcgcgaa
ggcatgcccggtcagggcatgacgttcggcaacatggccgagctcgagcatgcgctgcac
gccaaggctatccatctccacagcaagatcaagtatcgctgggaagggatgaacgaggaa
ggcaagatcgccaagcgctggatcgagaccaccgcgggccgcgtcatgctcggcaacctc
ctgccgaagcatccgcgcgtgaccttcgaggtcatcaacaagctgatgaccaagcgcgag
atctcgggcgtcatcgatcaggtctaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggccggcaagtggaagatcgtggacacgacgcgtacgctg
gcgaaggacttcgagcagcagtacaatgacggcctgatcacccatggcgagaagtataac
aaggtcgtcgacgcctggtcgaaggcctcggaagagatcgccaaggagatgatgaaggag
atctccgtcaccaagaagacggcgacgggggccgatgccgacatcaactcgatctacatg
atgtctcactccggtgcgcgtggttcgccggcacagatgcgtcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggttctcgagtacttcaactcgactcacggcgcccgcaagggtctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgtcgtctggtcgacgtcgcg
caggactgcatcatcacgcaggacgattgcggcacccatctcggcatcaagatgcgcgcg
atcgtcgacgccggcacgctggtggcctcgctcggctcgcgtatcctcggtcgcgtgcct
tgcgacgacgtgcgcgatcccgccaccaatgcggtgctggtcaaggccggcaccttgatg
gaggagagccacatcgacgccatccagcaggccggcgtgcaggaggtgaagatccgttcg
gcgctgacctgcgagctggtcaacggcatctgcaagatgtgctacggccgcgacctcgcg
cgcggtacgccggtcaaccatggtgaggctgtcggcgtcatcgccgcgcagtcgatcggt
gagcccggcacccagctgacgatgcgcaccttccacatcggcggcgcggcgcagctgaac
gagcagtccttcgtggaatcgaacttcgaaggcaaggtggtcatccgcaacaaggcgatc
gctcgcaacagcgagggtcacctgattgcgatggtccgcaacatggtcgtgacgatcgtc
gaccccgacggcaccgagcgtgcgacgcaccgtatccagtacggttcgcgcatgcatgtg
gacgacggcgacatgatcaagcgcggccagcgcatcgccgagtgggatccttacacccgc
ccgatcctcaccgaggcggagggcacgatcgggttcgaggatctcaccgaaggtctgtcg
atctcggagacgctcgacgagtccaccggtatcgccaagcgcgtggtcatcgactggcgt
ggaacgcgcggtggcgcggatctgcgtccggcgatcgtgatcaagggcaaggacggcaag
gtgctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgacgccattctg
tcggtcgacatcggggcgacggtcaagccgggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgcgacatcaccggcggtctgccgcgggtagcggagctgttcgaagcg
cgcaagccgaaggatgccgcgatcatcgccgagatcgccggtaccatccggttcggccgc
gactacaagaacaagcgtcgcatctcgatcgagccggtggacaagaccgaggaggcacgc
gagtacctgatcccgaagggcaagcacatccaccttcaggatggcgacatcgtcgagaag
ggtgacttcatcgtcgaaggcaacccggcgccgcacgacatcctggcgatcaagggcatc
gaggagctcgcggcctatctcgtcaacgagatccaggaggtctaccggctgcagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaagatcgaggtc
accgaccagggcgacaccgacatgatcgccggcgagcaggtcgacaagatcgagttcgac
gcgctgaacgcgaaggcgcaggaggagggcaagaagcccgcctccggcaatccggttctg
ctcggcatcaccaaggcgagcttgcagacccggtcgttcttctcggcggcctcgttccag
gagaccacccgcgttctcaccgaggcggcggtgaacggcaagatcgatccgctcgagggt
ctcaaggagaacgtcatcgtcggccgtctcatcccggccggcaccggcgcctccatggct
cgcatccgcgaggtcgctctcaagcgcgacaagctgattctcgacgagcgcgagaagcag
gccgcgatcgtgccgtcgcagcccgagccgcagccgctggcgttgccgcccgcggagtga
DBGET
integrated database retrieval system
