Bradyrhizobium sp. ORS 278: BRADO3356
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Entry
BRADO3356 CDS
T00516
Symbol
rnd
Name
(GenBank) Ribonuclease D (RNase D)
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bra
Bradyrhizobium sp. ORS 278
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bra03016
]
BRADO3356 (rnd)
Enzymes [BR:
bra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BRADO3356 (rnd)
Transfer RNA biogenesis [BR:
bra03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BRADO3356 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAL77147
UniProt:
A4YTC1
LinkDB
All DBs
Position
complement(3547793..3548962)
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AA seq
389 aa
AA seq
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MPRHGSFMDLITTTADLAAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASQDEAVVI
DALAEGIDLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIVPHPIFDTQVAAMVLGYGD
SIAYDQLVERITGHRPDKTHRFTDWSRRPLTKEQAHYAEADVTHLRDVFAALDTDLKKRG
RSDWVSEEMEILTSPKTYDFHPERAWERLKTRVRKPKELAVLIEVAAWREQEAQSRDVPR
SRVMKDDAVGDIATHAPTTIEKLGNLRSLPKGFERSKWGSDIVAAVQRGLARDLAGLPKL
EKPRNNSNGAAIVELLKVLLRMTSERHAVASKVIATVDDLEQIAADDQADVAALQGWRRE
LFGEAALALKHGKLALAIDKGRVVRVDRP
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
gtgcctcgtcatggatcgttcatggacttgatcaccaccaccgcggacctcgcagccgcc
tgcgcccgcctcgcccaacacccggtcatcaccgtcgataccgagttcctgcgggagacc
acctactaccccctgctctgcgtcgtgcagatggcgagccaggacgaggccgtggtgatc
gacgcgctcgccgagggcatcgatctcaaggcgttcttcgagctgatggccaatgagaag
gtcctcaaggtcttccacgccgcccgccaggatatcgagatcatctggcaccgcgccggc
atcgtgccgcacccgatcttcgacacccaggtcgccgcaatggtgctgggatacggcgac
agcatcgcctacgatcagttggtcgaacgcattaccggtcaccgcccggacaagacccac
cgcttcaccgactggtcgcgccggccgctcaccaaggagcaggcgcattacgccgaggcc
gacgtcacccatctgcgcgacgtgttcgccgcgctcgatacggatctcaagaagcgcggc
cgtagcgactgggtcagcgaggagatggagatcctgacctcgccgaagacctacgacttc
catcccgagcgcgcctgggaacggctgaagacccgcgtccgcaagccgaaggaattagct
gtcctgatcgaggtcgccgcctggcgcgagcaggaggcgcagagccgcgacgtgccgcgc
agccgtgtcatgaaggacgacgccgtcggcgatatcgccacgcacgctccgacgacgatc
gagaagctcggcaatctgcgttcgctgcccaaaggcttcgagcgctcgaaatggggctcc
gacatcgtcgccgccgtgcagcgcgggctcgcccgcgacctcgctggtctgcccaagctg
gagaagccgcgcaacaattccaacggggccgcgatcgtcgagctgctgaaagtcctgcta
cgcatgacctccgagcgtcacgccgtcgccagcaaggtgatcgccaccgtcgatgatctc
gagcagatcgcggccgacgaccaggccgacgtcgcggcgctgcagggctggcgccgcgag
ctgttcggcgaggctgcgctggcgctgaagcatggcaagctcgcgctcgccatcgacaag
ggccgcgtcgtcagggtcgaccggccctga
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