Bradyrhizobium sp. ORS 278: BRADO3511
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Entry
BRADO3511 CDS
T00516
Name
(GenBank) putative ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bra
Bradyrhizobium sp. ORS 278
Pathway
bra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRADO3511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bra03019
]
BRADO3511
03009 Ribosome biogenesis [BR:
bra03009
]
BRADO3511
Enzymes [BR:
bra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BRADO3511
Messenger RNA biogenesis [BR:
bra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRADO3511
Ribosome biogenesis [BR:
bra03009
]
Prokaryotic type
rRNA processing factors
BRADO3511
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAL77293
LinkDB
All DBs
Position
complement(3695236..3698451)
Genome browser
AA seq
1071 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEENENRSNRRRNRHRSSRR
RGSGERVQSEIVEAAESGQTVHAEGHEADHEAHEHHAYAGDDHPDHPHAEIDEHGVAQGF
SEAAVDAAEHDDATDAQDGAAESSHDHAEDHHDAGAVPTPAESVAAAEQPAARAAETAAA
PISDAPAEAPASAGDADDDHETHGHDQHDHDHDHHDHVHDEHDHDEHEHDEDVADIAPVG
AHEGDGATIVPGDENGTDPISDEHEDDDEEIEEEVVESVGGDDVLEEVPERTFRPRRQYK
IQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDR
SRLKEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWETVRDMTLKSQAPTLVY
EEGSLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVRAVKQYRDGQPLFSRM
GVESQLDAMFTPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIEDTALKTNMEAAEE
VARQLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARIQVGRISHFGLLEMSR
QRIRASVLESSTEPCAHCGGSGHVRSVSSVALQLLRSLEEALMKGATHNLVVRTRTEVAL
YVLNHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHTLEAAKALLAAQASAP
PLVAEEIYDDEEAFDVEIESEVETEETEGLSEEAADAASGDGDRDGPRRKRRRRRRGRGG
EAREGALPEGAVSSSAAESGSAAEQSVEDGEAEDEESEEQPAFAQGEQNDQAGGERRPRR
RGRRGGRRRRGGADEGLAGSIGDDLAPASVSEAEAAVADFDGNGNIHHHDEPAQPATLTH
AVAVTEAEETVATAAAPQAPAPAAEVPAQEPEAPKADSEKTPRRSTVREKVSFVTEPKPD
SVATAVNVAESSPAPAVPSPAPEPVATESSSEPPAAPRRAGWWSRRFGGGQ
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgctacccacccggaagagacccgggtggtcgtcgtc
cgcggtaaccgcgtcgaggaatttgatttcgaaactgcccagcgcaagcaactccggggc
aacatctatctggcaaaggtcacccgcgtcgaaccttcgctgcaggccgccttcgtcgaa
tacggcggcaatcgccatggcttcctggccttcagcgaaatccatcctgactactaccag
atcccggtcgcggaccggcaggcgctgatcgaggccgaagagcgcgcccaccgcgaggcc
gaggaagagaacgagaatcgttccaaccgccgccgcaaccgccaccgcagttcgcgccgc
cgcggcagtggcgagcgtgtgcagagcgagatcgtcgaggccgccgagagcggccagacc
gttcacgccgaaggccatgaggctgaccacgaggcgcatgagcatcacgcttacgccggt
gacgatcatccggatcatccgcacgcggaaatcgatgagcacggagtggcgcagggcttt
tccgaagcggcggtcgatgccgccgagcacgatgacgcgaccgacgcgcaggacggtgcg
gccgagtcgtcgcatgatcatgccgaggaccatcatgacgcgggcgccgtgcccacaccg
gcagagtccgtagccgccgccgagcaaccggccgcgcgggccgccgagactgcggccgcc
ccgatcagcgacgcgcccgccgaggcgccggcctccgctggagacgccgacgacgatcat
gagacccacggtcatgaccagcatgatcatgaccacgatcatcatgaccatgtccatgac
gagcacgatcacgacgagcatgagcacgacgaggatgtcgcggacatcgcgccggtcggc
gcgcatgagggcgatggtgcaacgatcgtgccgggcgacgagaacggcacagatccgatt
tccgacgagcatgaggacgacgacgaggagatcgaggaagaggtcgtcgaatccgtcggg
ggtgacgacgtgctcgaggaggtgccggagcgcaccttccgtccgcgccgccagtacaaa
attcaggaggtcatcaagcgccggcaggtgatgctggtgcaggtggtcaaggaggagcgc
ggcaacaagggggcggctctcaccacgtatctgtcgctcgctggccgttatgccgtgctg
atgccgaacaccgcccgcggcggcggcatcagccgcaagatcacctcggcgcaggaccgc
tcgcgcctcaaggaagtggtgcaggatctcgacgtgcccgagggcatgggcgtcatcctt
cgcaccgccggcgccaatcgcaccaagcccgagatcaagcgcgacttcgaatatctgctg
cgtctctgggaaaccgtccgcgacatgaccctgaagtcgcaggcgccgaccctggtctac
gaagagggctcgctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgacgaa
attctggtggccggcgaagcgggctaccgcgaggcccacgacttcatgaagatgctgatg
ccgaccaacgtccgggcggtgaagcaatatcgtgacggccagccgctgttctcgcggatg
ggcgtggagagccagctcgatgcgatgttcacgccgacggtccagcttcgctcgggcggc
tacatcgtcatcaaccagaccgaggcgctggtctcgatcgacgtgaactcgggccgcgcc
acgcgcgagcatcacatcgaggacaccgcgctcaagaccaacatggaggccgccgaggaa
gtggcgcggcagctccgtctgcgcgacctcgccggactgatcgtcatcgacttcatcgac
atggacgagaagcggaacaaccgctccgtcgaacgcaagctgtcggactgcctgcggcag
gaccgtgcccgcatccaggtcggccgcatctcgcatttcggtctgctcgaaatgtcgcgc
cagcgcattcgcgccagcgtgctggagagctcgaccgagccctgcgcgcattgcggcggc
agcggccatgtccgttccgtctcgtcagtcgcgctgcagcttctgcgcagcctcgaagag
gcgctgatgaagggcgcgacccacaatctcgtggtccgcacccgcaccgaggtggcactc
tacgtgctcaaccacaagcgcggccacctgcgcgacctcgagaacagcttcaaggtgtcg
ctggccgtcatcgccgatccgaatgtgagcgggcagcaatccttcatcatcgaccgcggc
gagcaggttcacaccctcgaggcggccaaggcgctgctcgcggcgcaggcctccgcgccg
ccgctggtggccgaggagatctacgacgacgaggaagctttcgacgtcgagatcgagtcc
gaggtcgagactgaagagaccgagggcctgtccgaggaggctgccgatgccgcgtccggc
gacggcgaccgtgatggtccgcgccgcaagcgccgccggcgtcgtcgcggccgtggcgga
gaggcccgcgagggcgcactgccggaaggcgcagtctcgtcatcggcagccgaatcgggc
tcggctgccgagcagtccgtcgaggacggcgaggccgaggatgaagagtcggaagagcag
ccggccttcgctcagggcgagcagaatgatcaggccggcggcgagcgacgtccccgccgt
cgcggccgccgcggcggccgccgccggcgtggtggcgcggacgagggtctcgccggttcg
atcggtgacgatctcgcgccggcctcggtgtctgaggctgaagccgcggtggccgacttc
gacggcaatggcaacattcatcatcacgatgagccggcccagcctgcgactctgacgcat
gccgtcgctgtgaccgaggccgaggagaccgttgcgaccgcggcggcgccgcaggcccct
gccccagccgctgaagttccggctcaggagcccgaagctcccaaggcggattcagagaag
accccgcgacgctccacggtgcgcgaaaaggtcagcttcgtcaccgagccgaagcccgac
agcgttgcgacggctgtgaacgtcgccgagagcagcccggctccggccgtaccgagccca
gcgcccgagccggttgcgaccgagtcgtcttcagagccgcctgccgccccgcgccgggcc
ggctggtggtcgcgtcgattcggtggagggcagtag
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