Bradyrhizobium sp. Ash2021: NL528_40810
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Entry
NL528_40810 CDS
T11004
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
braa Bradyrhizobium sp. Ash2021
Pathway
braa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
braa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NL528_40810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
braa03019
]
NL528_40810
Enzymes [BR:
braa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NL528_40810
Messenger RNA biogenesis [BR:
braa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NL528_40810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
HEM4
DUF8086
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WMT74174
LinkDB
All DBs
Position
8496724..8498232
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AA seq
502 aa
AA seq
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MERTPLLTSFQDFGLADPISRALKEENYLTPTPIQAQTIPIALTGRDVVGIAQTGTGKTA
AFALPILHRILENRIKPQPKACRVLVLSPTRELSSQILDSFNAYGRHIRLTSALAIGGVP
MGRQVRSVMQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFINDIRKIV
GKLPTKRQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVERITQRILQVDFSAKPA
ILAQLLKQEPVNRALIFTRTKHGADKVVKGLERAGIRANAIHGNKSQNHRERVLAAFRTG
EIRTLVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGAEGVAISLIAGAEE
MGYLRDIEKLIRIALPREDRRTPGSRDAAPAAAPRQHRGGRSAPRAHNVRGQDSRSHDSR
SKDSRSQEPRSHEPRSHESAPGSKGPRRHGRGGGNNAAPQAPRHESPRPAQGGKSESIQG
VAFLHRESRPNTQPNRTHRPQR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacccctcttttgacctcctttcaggatttcggcctcgccgatccaatttcg
cgtgcactcaaggaagaaaattatctcacgcccacgccgatccaggcacaaaccatcccc
atcgcattgaccggccgtgacgtggtcggcatcgcccagaccggcaccggcaagaccgca
gcctttgcgctgccgatcctgcaccgcatcctagagaaccgtatcaagccgcagcccaag
gcctgccgggtgctggtgctctcgcccacccgcgaattgtcgagccagatcctcgacagc
ttcaatgcctacggccgccatatccgcctcacctcggcgctggcgatcggcggcgtgccg
atgggccgccaggtccgctcggtgatgcagggcgtcgaagtcatggtggcgacccccggc
cgcttgctcgacctcgtgcaaagcaacgggctcaagctcggccaggtagagttcctggtg
ctcgacgaagccgaccgcatgctcgacatgggcttcatcaacgacatccggaagatcgtc
ggcaaactgccgaccaagcggcagacgctgttcttctcggccaccatgcccaaggatatc
gccgaactcgccgaagcgatgttgcgcgatccggcccgggtcgcggtgacgccggtggcc
tcgacggtggagcgcatcacccagcgcatcctccaggtcgatttctcggccaagccggcc
atcctggcgcagctcttaaagcaggaaccggtcaatcgcgccctgatcttcacccgcacc
aagcacggcgcggacaaggtggtgaagggcctcgaacgagccggcatccgcgccaacgcc
atccacggcaacaagtcgcagaaccaccgcgagcgcgtgctggcggcgttccgcaccggc
gagatccgcaccctcgtcgcaaccgacatcgccgcccgcggcatcgacgtcgacggcatc
agccatgtggtgaatttcgatctgccgaacgtgccggaaacctatgtccaccgcatcggc
cgcaccgcgcgcgccggcgccgaaggcgtcgccatctcgctgatcgcaggtgccgaggaa
atgggctatctgcgcgacatcgaaaagctgatccgtatcgcgctaccgcgggaagaccgc
cgcacgccgggcagccgcgatgccgcgccggccgccgcaccccggcaacaccggggcgga
cggtccgcgccgcgtgctcacaatgtcaggggccaggactcgcgttcccatgactcccgt
tccaaagactcccgttcccaggagccccggtcccatgagccccgctcccatgaatcggcg
ccgggatcaaaaggccctcgccgtcacggccgcggaggtggtaataatgccgcgccgcag
gcaccccggcacgagtcgccgcgtcccgcgcagggcggaaagagcgaaagcattcaaggc
gtcgccttcttgcatcgcgaaagccgcccgaatacccaacccaatcgcacccatcgaccg
cagcgctag
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