Bradyrhizobium sp. Ash2021: NL528_41980
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Entry
NL528_41980 CDS
T11004
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
braa Bradyrhizobium sp. Ash2021
Brite
KEGG Orthology (KO) [BR:
braa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
braa03019
]
NL528_41980 (hrpB)
Enzymes [BR:
braa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NL528_41980 (hrpB)
Messenger RNA biogenesis [BR:
braa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NL528_41980 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
AAA_30
ResIII
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WMT74391
LinkDB
All DBs
Position
8757192..8759666
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AA seq
824 aa
AA seq
DB search
MPRSFDTPLPIDAVLDELARTLTANNAAVLVAPPGAGKTTRVPLALLDAPWLNGKKIIML
EPRRIAARASADRMAKTLGERAGETVGYRVRFGSKISRATRIEVVTEGIFSRQILDDPEL
NGVAAVLFDEFHERSLDADLGLALGRDAQTGLREDLRILVMSATLDGARVAKLLGDAPVI
ASEGRAFPVETRYLGRKPDAPLERQMADAIATALRADPGSVLAFLPGAAEIRRTQNFLGE
RIHDASIEIVPLFGALDASVQDRAIAPAPKGCRKVVLATSIAETSLTIEGVRIVVDSGMA
RVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLAAYTQPEIL
SADLSSLVLDLAQWGVSDPATLAFLDAPPAPALKEANSLLGELGALDADGRITEEGKSLR
ALALPPRLARMIVDSDRLGAGEEAAEIAAILTERGLGGDSVDLDARLDQFRRDRSQRASS
ARSLAQRWASQVAASNSPQAAGDLSTGIMLALAFPDRVARNRGNGSFVLANGRGAAVEQI
SALARAPYIAVAELTGTAAQGRILLAAPITQEEIELRFADQIASTEEISFDRGAMALRAR
RKRTLHAITLSEAPMALSPTAETARVFADGLIAAGLDKLPWSKPLKQWRDRVMFLRKAEG
ESWPDLSDAALAAGRETWLVAALYDKTSLKDFSAGDLSDALMNLLPWELRARLEREAPTH
FEAPTGTMLAIDYEAEQGPTIAVRLQELFGLNTHPSIAKGAVPLVLELLSPAQRPVQVTR
DLPGFWRGSYAAVRSDLRGRYPRHPWPEDPANAMPTRRVKPRGT
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttgccccgcagcttcgacacccccctcccgattgacgcggtgctcgacgaactcgcgcgc
acgctgacggccaacaacgccgccgtgctggtggcgccgccgggggccggcaagaccacg
cgggtgccgctggcgctgctcgatgcgccctggctgaacggcaagaagatcatcatgctg
gagccgcggcggatcgcggcccgcgccagcgccgaccggatggccaagacgctgggcgag
cgcgccggcgagaccgtcggctaccgcgtccgcttcggttcaaaaatatcgcgggcgacg
cggatcgaagtcgtcaccgagggcatcttctcgcgccagattctcgacgatcccgaattg
aacggcgtcgccgcggtgctgttcgacgaatttcacgagcgttcactcgatgccgatctc
ggcctggcgctggggcgcgacgcgcagaccggtttgcgcgaggatcttcgcatcctcgtg
atgtcggcaaccctcgacggcgcgcgggtcgcaaaattgcttggcgacgcgcccgtgatt
gccagcgaaggccgcgcctttccggtcgagacgcgctatctcggccgcaaacccgatgcg
ccgctggagcggcagatggcggatgcgatcgcgaccgcgctgcgcgccgatcctggctcg
gtgctcgccttcctgccgggcgctgccgaaatccgccgcacgcagaattttcttggcgaa
cgcattcacgacgcctccatcgagatcgtgccgctgttcggcgcgctcgatgccagcgtg
caggaccgcgccattgcgccggcgccgaaagggtgccgcaaggtggtgctggcgacctcg
atcgccgagacctcgctgaccatcgaaggcgtccgcatcgtcgtggattccggcatggcg
cgggtaccgcgctacgagccggacattgggctgacgcggctggagacggtgcgcgcctcg
cgcgcggcggtcgaccagcgccgcggccgcgccggccgcaccgagcccggcgtgtgctac
cgtctctgggacgagccgcaaaccgcctcgctcgcggcctacacgcagcctgaaatcctc
tcggccgatctgtcctcgctggtgctcgatctcgcgcaatggggcgtcagcgatcccgcg
acgcttgcattcctcgatgcgccgcccgcgccggcactgaaggaagccaatagcctgctc
ggcgaactcggcgcgctcgatgccgacggccggatcaccgaagaaggcaaaagcctgcgc
gcgctggcgctgccgccacggctggcgcggatgatcgtggattcggaccggctgggggca
ggggaggaagccgctgaaatcgcggcgatcctgaccgaacgcggcctcggcggcgacagc
gtcgatctcgacgcccggctcgaccagttccgccgcgaccgttcgcaacgcgcttccagc
gcccgcagcctggcgcagcgctgggcctcgcaggtggcggcttcgaactcaccgcaagcg
gcaggcgacctctccaccggaatcatgctggcgctggccttcccggatcgcgtcgcgcgc
aaccgtggcaatggcagctttgtgctggccaacggccgcggtgccgccgtggaacagatc
tccgcgctggcgcgcgcgccctatattgcggtcgccgagctgacgggcacggccgcgcag
ggccgcattctgctggccgcgccgatcacccaggaagagatcgaattgcgctttgccgat
cagatcgcaagcacggaggagatttcgttcgatcggggcgcgatggcgctgcgcgcccgc
cgcaagcggaccctgcacgcgatcacgctgtcggaagcgccgatggcgctgtcgccgacg
gcggagaccgcgcgcgttttcgccgacgggctgatcgcggccggcctcgacaaattgccg
tggtcgaaacccctcaagcaatggcgcgaccgcgtcatgttcctgcgcaaggcggaaggc
gaaagctggccggatttgtccgacgccgcactcgcggccgggcgggagacctggctggtg
gcggcgctttacgacaaaacatcgctgaaggatttttccgccggcgatttgtcggacgcg
ctgatgaacttgctgccctgggaattgcgcgcacggctggagcgcgaagcgccgacgcat
ttcgaagcgccgaccggcaccatgctggcgatcgactacgaggccgagcagggcccgacc
attgccgtccggctgcaggaattgtttgggctcaacacccatccttcgatcgccaagggc
gcagtgccgctggtgctggaactgctgtcgccggcgcagcggccggtgcaggtgacgcgc
gatctgccgggcttttggcgcggcagctatgccgccgtgcgctccgacctgcgcggccgt
tatccccggcatccctggccggaagatccggccaacgcgatgccgacgcggcgggtgaag
ccgcgcgggacctga
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