Bradyrhizobium sp. BWA-3-5: RX331_14440
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Entry
RX331_14440 CDS
T11384
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
brab Bradyrhizobium sp. BWA-3-5
Brite
KEGG Orthology (KO) [BR:
brab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brab03016
]
RX331_14440
Enzymes [BR:
brab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RX331_14440
Transfer RNA biogenesis [BR:
brab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RX331_14440
Prokaryotic type
tRNA splicing ligases
RX331_14440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
WOH68824
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Position
3028975..3029727
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AA seq
250 aa
AA seq
DB search
MRSDHYQERARALAVEAGLNPDAKIDRPGQRSMPTWCLFRDAARKEKLARDAEAVAGDIA
SKPQAAQYQNSPLKIFGTHEDATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGRVIAYE
KQISISGVGYDIGCGNMAVRLDTTFNQIENNVSTIIKDVHNVISFGVGRSNDERVEHALF
DDADACRESDMNAYRQKAVSQLGTVGSGNHYVDLLRDEEGFVWIGVHFGSRGLGHTSATR
YLKARAARTA
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgcgatccgatcactaccaggagcgcgcccgggctttggccgttgaggctgggctcaac
cctgacgccaagatcgaccgtcccggccagcggtcgatgccgacttggtgcctgtttcgc
gatgccgcgcgtaaggaaaagcttgcacgcgatgcggaggcggttgccggcgacatcgcc
agcaagccgcaggcggcgcaataccagaacagcccgctgaagatttttggcacgcacgag
gacgcaacgattgcgcagatgcgcaactgcatgtcggtcggcaatgcggttgccggcgtg
atttgcgcggacggccatctcggctatgcccagccggtcggccgcgtgattgcctatgag
aagcagatcagcatctccggcgttggctacgacatcggctgcggcaacatggccgtgcgc
ctcgatacaacgtttaaccagatcgaaaacaacgtcagtaccatcatcaaggacgtgcac
aacgtgatctcgttcggcgtgggccgcagcaatgacgagcgcgtcgagcatgcgctgttc
gacgacgccgacgcatgccgcgaatccgacatgaacgcctatcggcagaaggcggtctcg
cagctcggcaccgtcgggtcgggcaaccactatgtcgacctgctccgcgacgaggagggc
tttgtctggatcggcgtccacttcggcagccgcggcctcggccacaccagcgcgacccgc
tacctcaaggcgcgggcggcaaggacggcatga
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