Bradyrhizobium sp. BWA-3-5: RX331_35185
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Entry
RX331_35185 CDS
T11384
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
brab Bradyrhizobium sp. BWA-3-5
Pathway
brab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RX331_35185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brab03019
]
RX331_35185
Enzymes [BR:
brab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RX331_35185
Messenger RNA biogenesis [BR:
brab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RX331_35185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
P-loop_SecA
SUa-2TM
DUF8086
CMS1
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WOH65721
LinkDB
All DBs
Position
7311125..7312579
Genome browser
AA seq
484 aa
AA seq
DB search
MERTPLLTSFQDFGLADPISRALKEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTA
AFALPILHRLLENRIRPQPKSCRVLVLSPTRELSGQILDSFNAYGRHIRLSAALAIGGVP
MGRQVRSVMQGVEVMVATPGRLLDLVQSNGLKLNQVEFLVLDEADRMLDMGFINDIRKVV
AKLPIKRQTLFFSATMPQDIAELAESMLRDPARVAVTPVASTADRIAQRIIQVDFAAKPA
VLAQLLKQEPIDRALVFTRTKHGADKVVKVLAKAGIEANAIHGNKSQNHRERVLAAFRSG
EVRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGAEGVAISLIAGAEE
MGYLRDIERLIRITLPREDRRTPGARDAAPAAPHPVQHRNGRPGARAHGGRSNEQAQAAK
GPRRRRRGGGNNAPPQANRHEGPRPAQHGGKGQGGHSEGIQGVAFLHRESRPNNQPNRSH
RPQR
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacccctcttttgacctcctttcaggatttcggcctcgccgatcccatctcg
cgtgcactcaaggaagaaaattaccacactcccacaccaatccaggcccagaccatcccc
cttgccttggccggccgcgacgtcgtcggcatcgcccagaccggaaccggcaagaccgcg
gccttcgcgctgccgatcctgcaccgcctgctggagaaccgcatccgcccgcagccgaag
agctgccgcgtgctggtgctgtcgccgacccgcgaattgtcgggccagatcctcgacagc
ttcaacgcctatggccgccatatccgcctctccgcggcgctggcgatcggcggcgtgcca
atgggccgccaggtccgctcggtgatgcagggcgtcgaggtgatggtggcgacccccggc
cgcctgctcgatctcgtgcagagcaacgggctgaagctgaaccaggtcgagttcctcgtg
ctcgacgaggccgaccgcatgctcgacatgggcttcatcaatgacatccgtaaagtcgtc
gccaagctcccgatcaagcgccagacgctgttcttctcggccaccatgccgcaggacatc
gcggaactcgccgaatcgatgctgcgcgatcccgctcgcgtggcggtgacgccggtggcc
tcgacggccgaccgcatcgcccagcgcatcatccaggtcgatttcgcggccaaacctgcc
gtactggcccagcttctcaagcaggaaccgatcgaccgcgcgctggtgttcacccgcacc
aagcatggcgccgacaaggtggtgaaggtgctggccaaggccggcatcgaagcaaatgcc
atccacggcaacaagtcgcagaaccaccgcgagcgcgtgctggcggcgttccgctccggc
gaggtccgcacgctcgtcgccaccgacattgccgcccgcggcatcgacgtcgacggcgtc
agccatgtggtgaatttcgacctgcccaacgtgcccgaaacctatgtccaccgcatcggc
cgcaccgcccgcgccggcgccgagggcgttgcgatctcgctgatcgcgggcgccgaggag
atgggctatctgcgcgacatcgagcggctgatccgcatcacgctgccgcgggaagaccgc
cgcacgccgggagcgcgcgatgccgctccggccgcgccgcacccggtccagcaccgtaac
ggacggcctggggcacgtgcccatggcggccgctccaacgaacaggcgcaggccgcaaaa
ggccctcgccgacggcgccgcggtggtggtaataatgcgccgccgcaggcgaaccggcat
gaagggccgcgtccggcgcagcacggcggcaagggccagggcggccacagcgaaggcatt
caaggcgtcgccttcttgcatcgcgagagccgtccgaataatcaaccgaaccgcagccac
cgaccgcagcgctag
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