Brachybacterium sp. GU-2: RBL05_02980
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Entry
RBL05_02980 CDS
T10376
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
brac Brachybacterium sp. GU-2
Pathway
brac03030
DNA replication
brac03430
Mismatch repair
brac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBL05_02980 (dnaE)
03430 Mismatch repair
RBL05_02980 (dnaE)
03440 Homologous recombination
RBL05_02980 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brac03032
]
RBL05_02980 (dnaE)
03400 DNA repair and recombination proteins [BR:
brac03400
]
RBL05_02980 (dnaE)
Enzymes [BR:
brac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBL05_02980 (dnaE)
DNA replication proteins [BR:
brac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBL05_02980 (dnaE)
DNA repair and recombination proteins [BR:
brac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBL05_02980 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WME23722
LinkDB
All DBs
Position
complement(1136190..1139768)
Genome browser
AA seq
1192 aa
AA seq
DB search
MASAGSDDFVHLHVHTDYSLLDGAAKIDKLVAETVNQGQQAVAITDHGYLFGAYEFYKAA
TDAGVKPIVGIEAYVTPGTSRHDRTRVQWGTKEQQAAGDDVSARGAYTHMTLLSKSTEGM
HNLFRLGSAASLDGQMGKWPRMDREILSKYAPGLIATSGCPSGEVQTRLRLGQFDEAVKA
AGEFQDMFGRDSYFIELMDHGLDIEKRVTKDLLEVAKAVNAPLVATNDLHYVTEQDATIQ
DVLLCINSGSRLNDPDRFKFGGSGYFLKSAQQMRELFREFPEACDNTLRIAEMCDVSFTT
TSEGANYMPHFPTPGGEDEESWFVKQVQDGLHYRYPSGIPDEVQKRADYEVGIILQMGFP
GYFLVVSDYIKWAKEQGIRVGPGRGSGAGSMVAYAMRITDLDPIEHGLLFERFLNPDRVS
MPDFDVDFDDRRRGEVIEYVEQKYGDDKVSQVVTYGVMKTKNSIKDAARVLDYPFAMGDK
ITKALPPAVMGKDIPINGIFDPENKRYAEATEFRRMHDEDPDVQKVVEIAKGVEGLTRGW
GVHACAVIMSSHTLTDIIPMMRRPSDGQIITQFEYPTCETLGLLKMDFLGLRNLTVLSDA
VENMSRNGKTPPDLETLPFDDPATYELLQRGDTLGVFQLDGSGMRTLLRQMKPDQFGDIT
AVSALYRPGPMGMGSHTNYALRKNGLQEITPIHPELEEPLSEILDETYGVLVYQEQVMQT
AQKVAGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKDNGYSDAAVQALWETLLPFAD
YAFNKSHSAAYGVVSYWTAYLKANHPTEYMAALLTSTQENRDRLGLYLGDCRHRGITVLP
PDVNESDLYFSAVGDDIRFGLSAIRNVGTNVVEEIIRTREEKGAFTSFTDFLDQVPLSVC
NKRTIESLIKGGAFDSLGHNRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFADVFGGAGGG
EGEDAMASGSAATLTIPDLPEWDRKELLAFERNMLGLYVSDHPLYGLEHVIAQNSSTSIS
SLADDGAVKDGEMVTIAGLITTLQRKTTKKGDMWAIATVEDLEGSIDCLMFPSTYMTVAS
ELAEDLVVSMKGRVDTSKGMPELRVMEMTIPETGGGVDGPVTIALPALRATEKVVGDLRG
VLEDNPGSSEVRVKLQEPGRTTLMQLDKRLAVTPSAALYASLKALLGPGCLS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcgggttccgatgacttcgtccatctccacgtccacaccgattactcgctg
ctggacggcgccgcgaagatcgacaagctggtcgccgagacggtgaaccagggccagcag
gcggtggcgatcaccgaccacggctatctcttcggcgcctacgagttctacaaggccgcg
accgacgccggggtcaagcccatcgtcggcatcgaggcctatgtgactcccgggacgagt
cgtcatgaccgcacccgcgtgcagtggggcaccaaggagcagcaggcggcgggcgatgac
gtctccgcccgcggcgcctacacccacatgaccctgctgtcgaagtcgaccgagggcatg
cacaacctcttccgcctcggctcggccgcgtccctcgacgggcagatgggcaagtggccg
cggatggaccgcgagatcctctcgaagtacgcgccgggcctgatcgccacctccggctgc
ccctccggcgaggtgcagacccgcctgcggctgggacagttcgacgaggccgtgaaggcc
gccggcgagttccaggacatgttcggcagggacagctacttcatcgagctgatggaccac
ggcctcgacatcgagaagcgcgtgaccaaggacctgctcgaggtcgccaaggcggtgaac
gccccgctggtggcgaccaacgacctccactacgtcaccgagcaggacgccaccatccag
gacgtgctgctgtgcatcaactccggctcgcgcctgaacgatcccgaccgcttcaagttc
ggcggctccggctacttcctgaagtccgcccagcagatgcgggagctgttccgcgagttc
cccgaggcctgcgacaacacgctgcgcatcgccgagatgtgcgacgtctccttcaccacc
acctctgagggcgcgaactacatgccgcacttccccaccccgggcggggaggacgaggag
tcgtggttcgtcaagcaggtccaggacggcctgcactaccgctacccctccggcatcccc
gacgaggtccagaagcgcgccgactacgaggtcgggatcatcctccagatgggcttcccc
ggctacttcctggtcgtctccgactacatcaagtgggccaaggagcaggggatccgcgtc
ggccccggccgtggctccggcgccggctcgatggtcgcctacgccatgcgcatcaccgac
ctcgacccgatcgagcacggcctgctcttcgagcggttcctgaacccggaccgcgtctcc
atgcccgacttcgacgtcgacttcgatgatcgccgccgcggcgaggtcatcgagtacgtc
gagcagaagtacggcgacgacaaggtctcccaggtcgtcacctacggcgtcatgaagacg
aagaactccatcaaggacgccgcccgcgtcctggactacccgttcgcgatgggggacaag
atcaccaaggcgctgccgccggcggtgatgggcaaggacatcccgatcaacgggatcttc
gaccccgagaacaagcgctacgcggaggcgaccgagttccgccgcatgcacgacgaggac
cccgacgtccagaaggtcgtcgagatcgccaagggcgtggagggcctgacccgcggctgg
ggcgtgcacgcctgcgcggtcatcatgtccagccacaccctcaccgacatcatcccgatg
atgcgccgcccctccgacggtcagatcatcacccagttcgagtacccgacctgcgagacg
ctcggcctgctgaagatggacttcctggggctgcggaacctcaccgtcctctccgacgcg
gtggagaacatgtcccgcaacgggaagaccccgccggacctggagaccctgcccttcgac
gacccggcgacctacgagctgctccagcgcggcgacaccttgggcgtgttccagctcgat
ggctcgggcatgcgcaccctgctgcggcagatgaagcccgaccagttcggggacatcacc
gccgtctcggcgctgtaccgtccgggcccgatgggcatgggctcgcacaccaactacgcg
ctgcgcaagaacggcctgcaggagatcacgccgatccacccggagctcgaggagccgctc
tcggagatcctcgacgagacctacggcgtgctcgtctaccaggagcaggtgatgcagacg
gcgcagaaggtcgccggctactcgctcggcgaggcggacatcctccgtcgcgccatgggc
aagaagaagaaggcggagctggacaagcagtacgtctccttcgaggcgggcatgaaggac
aacggctactccgacgccgccgtgcaggcgctgtgggagacgctgctgcccttcgcggac
tacgccttcaacaagtcccactccgccgcctacggcgtggtctcctactggaccgcctat
ctcaaggcgaatcaccccacggagtacatggccgcgctgctgacctccacccaggagaac
cgcgaccggctcggcctctacctcggcgactgccgccaccgcggcatcaccgtgctgccc
ccggacgtcaacgagtccgacctgtacttctccgccgtcggcgacgacatccgcttcgga
ctctccgcgatccgcaacgtcggcacgaatgtggtcgaggagatcatccgcacccgggag
gagaagggcgccttcacctccttcaccgacttcctggaccaggtcccgctgtcggtgtgc
aacaagcggaccatcgagtcgctgatcaagggcggcgccttcgactccctcggccacaac
cgccgctccctcgtgctgatccacgaggatgccgtcgactcggtcgtcgacgtcaagcgc
aaggaggcccagggccagtacgacctcttcgccgacgtcttcggcggcgcgggcggcggc
gagggcgaggacgcgatggcctccggctccgcggcgacgctgaccatcccggacctgccc
gagtgggaccgcaaggagctgctcgccttcgagcgcaacatgctgggcctgtacgtctcg
gaccaccccctgtacgggctcgagcacgtcatcgcccagaactcctccacctccatcagc
tcgctggccgacgacggcgccgtcaaggacggcgagatggtcacgatcgcggggctgatc
accaccctgcagcgcaagaccaccaagaagggcgacatgtgggcgatcgccacggtcgag
gacctcgagggctcgatcgactgcctgatgttcccctcgacctacatgaccgtcgcctca
gagctcgccgaggacctcgtcgtctcgatgaagggccgggtcgacacctccaagggcatg
cccgagctgcgggtcatggagatgacgatcccggagaccgggggaggggtcgacggcccc
gtcaccatcgccctgcccgccctgcgcgccaccgagaaggtggtcggcgacctccgcggc
gtgctcgaggacaaccccggctcctccgaggtgcgggtcaagctccaggagcccggccgc
acgaccctgatgcagctggacaagcgcctcgcggtcaccccgtcggccgcgctgtacgcc
tcgctgaaggccctgctgggcccgggatgcctctcctga
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integrated database retrieval system
