Brachybacterium sp. GU-2: RBL05_05130
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Entry
RBL05_05130 CDS
T10376
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
brac Brachybacterium sp. GU-2
Pathway
brac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBL05_05130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brac03019
]
RBL05_05130
03009 Ribosome biogenesis [BR:
brac03009
]
RBL05_05130
Enzymes [BR:
brac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBL05_05130
Messenger RNA biogenesis [BR:
brac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBL05_05130
Ribosome biogenesis [BR:
brac03009
]
Prokaryotic type
rRNA helicases
RBL05_05130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
LPD26
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WME24103
LinkDB
All DBs
Position
659813..661714
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AA seq
633 aa
AA seq
DB search
MTESRPAPDAADPADGSDVPAETVTESTEGTGAQSGTAPSAAEEPQAPAGPSFDDIDLPA
PLRRAVDELGFTTPSAIQAQAIPSLLEGRDVIGVAQTGTGKTAAFGLPLLAAVDPSVREV
QALVLAPTRELAMQVADAISSFATSMGGLDVVALYGGSPYGPQERALSRGAQVVVGTPGR
VMDHMRRANLKLDTIRFAVLDEADEMLRMGFAEDVEEILSHSPESRQVALFSATMPAAIQ
RVAQTHMKDPVRVSVTPQSSTVKSVTQTYAVVPFKHRTGALARVLATSSAEAAIVFVRTR
AAAEEVGSALVARGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAARGLDVERIG
LVVNFDVPKEAESYVHRIGRTGRAGRTGEALTFIGPHERRALKNIERATKQTLAEADIPS
PRDVSKHRLAALLTQVPERIERGRLELYRELIGEFVAENEIDPLELAAVLGAMTVGDEGP
GAATEDEEFTGAQLRGDDRDRGDRGPREATPTERGYTSYKVGVGHSHGARPPGIVGAMTG
EGGLNGKDIGKIQIFPHFSLVQIRGSLSPEQIDRIGRAKLGGRELRIGPDRGPRGGKGPR
RDGERPFRRDDRPRRDDRGGRPEGKRRPFRREG
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatcccgccctgcccccgatgccgccgaccccgccgacgggtccgacgtccct
gccgagaccgtgaccgagagcaccgaggggacgggcgcgcagagcgggaccgccccgtcg
gccgccgaggagccgcaggccccggccgggcccagcttcgacgacatcgacctgccggcg
ccgctgcgccgcgcggtcgacgagctcggcttcaccaccccctcggcgatccaggcgcag
gcgatcccctccctgctcgagggccgcgacgtgatcggcgtcgcccagaccggcaccggc
aagacggccgccttcggcctgccgctgctggccgccgtggacccgtccgtccgcgaggtg
caggcgctggtgctcgccccgacccgtgagctcgcgatgcaggtcgccgacgcgatctcc
tccttcgccacctccatgggcgggctcgacgtggtcgccctgtacggcggctccccctac
gggccgcaggagcgcgcgctctcccgcggcgcccaggtcgtcgtcggcacccccggccgc
gtgatggaccacatgcgccgcgcgaacctcaagctggacacgatccgcttcgcggtcctg
gacgaggccgacgagatgctgcgcatgggcttcgcggaggacgtcgaggagatcctctcc
cactcccccgagagccgtcaggtcgctctgttctccgcgacgatgcccgccgcgatccag
cgcgtggcgcagacccacatgaaggacccggtgcgcgtgagcgtcaccccgcagtcctcc
accgtcaagagcgtcacccagacctacgccgtggtgcccttcaagcaccgcaccggcgcg
ctcgcccgcgtgctggccacctcgtccgccgaggcggcgatcgtcttcgtgcgcacccgc
gccgccgccgaggaggtgggctccgcgctggtggcccgcggcctgatcgcggcgtcgatc
agcggcgacgtgccgcagaaggagcgcgagaagatcgtcgagcggctccgcgacggctcc
ctgcaggtgctcgtcgccaccgacgtcgccgcccgcggcctggacgtcgagcggatcggc
ctggtggtgaacttcgacgtgcccaaggaggcggagtcgtacgtccaccgcatcggccgc
accggtcgcgcgggccgcaccggcgaggcgctgaccttcatcggcccgcacgagcgccgt
gcgctgaagaacatcgagcgcgccaccaagcagaccctcgccgaggcggacatcccctcg
ccccgcgacgtctccaagcaccgtctcgccgcgctgctgacccaggtccccgagcggatc
gagcggggccgtctggagctgtaccgcgagctgatcggcgagttcgtcgccgagaacgag
atcgacccgctcgagctcgccgccgtgctcggcgcgatgaccgtgggcgacgagggcccc
ggcgcggcgacggaggacgaggagttcaccggcgcgcagctgcgcggggacgaccgcgac
cgcggcgaccgcggcccgcgggaggcgacgccgacggagcgcgggtacacctcctacaag
gtcggggtcggtcactcccacggcgcgcgcccgccgggcatcgtcggcgccatgaccggc
gagggcggcctgaacgggaaggacatcggcaagatccagatcttcccgcacttctcgctg
gtccagatccgcggctcgctcagcccggagcagatcgaccgcatcggccgggcgaagctc
ggcggtcgcgagctgcgcatcggcccggaccgcgggccgcgcgggggcaagggcccgcgt
cgtgacggcgagcgacccttccgccgcgacgaccgtccgcgccgtgacgaccgcggcggc
cgccccgaggggaagcgtcgccccttccgccgggagggctga
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