Brachybacterium sp. GU-2: RBL05_08840
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Entry
RBL05_08840 CDS
T10376
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
brac Brachybacterium sp. GU-2
Brite
KEGG Orthology (KO) [BR:
brac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brac03019
]
RBL05_08840 (hrpA)
Enzymes [BR:
brac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RBL05_08840 (hrpA)
Messenger RNA biogenesis [BR:
brac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RBL05_08840 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
ABC_tran
FtsK_SpoIIIE
ResIII
T2SSE
AAA_11
SLFN-g3_helicase
TrwB_AAD_bind
nSTAND_NTPase5
AAA_23
Zeta_toxin
SRP54
Motif
Other DBs
NCBI-ProteinID:
WNN96481
LinkDB
All DBs
Position
3557519..3561433
Genome browser
AA seq
1304 aa
AA seq
DB search
MTTTSSNPDPSAPHPAEQAPAPGPRITYPGDLPVSQRREDIQKAISENQVVVIAGATGSG
KTTQIPKMLLELGYGQDGRIIGHTQPRRIAARSVAQRISSELGEKLGEGTVGYQVRFTKE
TSRGTRLKLMTDGILLAEIGRDRLLKRYDAIIIDEAHERSLNIDVILGYLRQILPQRPDL
KVIITSATIDPERFAEHFAATLPSGEKEPAPIIEVSGRTYPVEIRYRPLVLEADVDEDDE
LEDIHSIERDLTEAITDAVDELAAEGPGDMLVFLPGEREIREISDSLEKHLARGTRGRSA
LPVEVLPLFGRLSAQDQQKIFSPPKAGTYRRIILSTNVAETSLTVPGITYVIDSGLARIS
RYSQRTKVQRLPIEPISQASANQRSGRSGRTAPGIAIRLFSEEDFEGRPEFTEPEILRTS
LASVVLLMTSLGLGDVESFPFVEPPASRAITDGVRLLEELGAIEPDERAPGGRRLTRVGR
TLARFPLDPRMARMLIEAGRLGALREVLIIVAALSIQDPRERPLGQEQQAREKHKRFEDE
TSDFLSFLNLWNHLQERRDALSSSAFRREVRAEHLHYLRIREWWDLHAQLRDMAKDAGLS
RNDNDASPQAIHQALLAGLLSHVGLLDDRTREYSGARGARFALWPGSTLAKKRPDYVMVA
ELVETSRLWGRTAARIDPAWAEETGAHVVKRSHSAPHWSSKRASAMAHEKVTLYGVPLVA
DRVVGYGRIDPEAARDIFLQNALIEGDWRTRHHFFRDNRALIARLEELEAKTRRRDLLIS
DEQLFSFYDARIPKHVVSGRHFDTWWKKARRETPDLLTLTEQDLLAADEEVTEAIRSDFP
DTWVQGDITLPLSYSFGEVGAKGADGVTATIPLAVLNRLAPRGFDWLVPGMREELVTELI
RSLPKPIRRHLVPAPERAKAVAGTLHDDDPDGGEAFVEAVADELVALPGVPEDLPLYGPE
FDLTKLPAHLRMHFRVVDGKGREVGAGDDLEALKQRLKKRVDTTVSNQSTEIARTDLPSF
PAGGVPAVHESTVGGLKVTGYPSLVARRGKDGRLERVDLAVLATADEQALAHREGVIALI
DREIGTDLSRVLNALPNPTKLAVSGSDYASTAALLADASRAATVHLAGRAQVRTRAEYEQ
LLETVRQRHDELAAGAVKDAAAALAVNAKLQRELGRATSLAVLSHLTQIREHAASLLGDG
FISRTGIAHLGDLSRYLRADLHRLEKLPENPRRDEQLAWQIGDLEQYWAAQKQKLSARRR
AEPDVQEIDWLLEELRVSLFAQTLGTAQTVSDKRIRKAIAELTA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacctcctcgaaccccgatccgtccgccccgcaccctgccgagcaggcccct
gcccccgggccgcggatcacctacccgggagacctgcccgtctcgcagcgccgcgaggac
atccagaaggcgatctcggagaaccaggtcgtggtcatcgccggcgccaccggctccggc
aagaccacccagatcccgaagatgctgctcgagctcggctacgggcaggacggccggatc
atcggccacacccagccgcgacgcatcgccgcccgctccgtcgcccagcgcatctcgagc
gagctgggggagaagctcggcgaggggaccgtcggctaccaggtccgcttcacgaaggag
acctcccgcggcacccgcctgaagctgatgaccgacggcatcctgctggccgagatcggc
cgggaccgcctcctgaagcgctacgacgcgatcatcatcgacgaggcccacgagcgctcg
ctgaacatcgacgtgatcctcggctacctccgccagatcctcccgcagcgccccgacctc
aaggtcatcatcacctccgccacgatcgaccccgagcgcttcgccgagcacttcgccgcg
acgctgccctcgggggagaaggagcccgccccgatcatcgaggtctccggccgcacctat
cccgtcgagatccgctaccgccccctcgtgctcgaggccgacgtcgacgaggacgacgag
ctcgaggacatccactccatcgaacgggacctcaccgaggccatcaccgacgcggtcgac
gagctcgccgccgagggccccggcgacatgctcgtcttcctccccggcgagcgcgagatc
cgcgagatctccgactccctcgagaagcatctcgcccgcggcacccgcggccgctccgcc
ctgcccgtcgaggtgctgcccctgttcggccggctctccgcccaggaccagcagaagatc
ttctccccgccgaaggccggcacctaccgccgcatcatcctgtcgacgaacgtcgccgag
acctccctgaccgtccccggcatcacctacgtcatcgactccgggctcgcgcgcatctcc
cgctactcccagcgcaccaaggtgcagcgcctcccgatcgagccgatctcccaggccagc
gcgaaccagcgctccggccgctcgggccgcaccgcccccggcatcgcgatccgcctcttc
tccgaggaggacttcgagggccggcccgagttcaccgagccggagatcctgcgcacctcc
ctcgcctccgtcgtgctgctcatgacgagcctcggcctcggcgacgtggagtccttcccc
ttcgtcgagccgccggcctcccgcgcgatcaccgacggcgtgcgcctgctcgaggagctc
ggcgcgatcgagcccgacgagcgcgcaccgggcggtcgccggctcacccgcgtcggccgc
accctggcccgcttcccgctggacccgcgcatggcgcggatgctgatcgaggccggccgg
ctcggcgcgctgcgcgaggtgctgatcatcgtcgcggccctgtcgatccaggacccgcgc
gagcggccgctcgggcaggagcagcaggccagggagaagcacaagcgcttcgaggacgag
accagcgacttcctctccttcctgaacctgtggaaccacctgcaggagcggcgcgacgcg
ctctcctccagcgctttccgccgcgaggtgcgcgccgagcacctccactacctccgcatc
cgcgagtggtgggacctgcacgcccagctgcgggacatggccaaggacgccgggctctcc
cgcaacgacaacgacgcgagcccgcaggcgatccatcaggcgctgctggcggggctgctc
agccatgtcggcctgctggacgaccgcacccgtgagtactccggtgcccgcggcgcacgc
ttcgcgctgtggcccggctcgacgctggcgaagaagcgacccgactacgtcatggtcgcc
gagctcgtggagaccagccggctgtggggccgcaccgccgcccgcatcgaccccgcctgg
gcggaggagaccggtgcgcacgtcgtcaagcgctcccactccgccccgcactggtcctcc
aagcgcgcctccgccatggcgcacgagaaggtgaccctctacggcgtgccgctggtcgcc
gaccgcgtcgtcggctacggccgcatcgaccccgaggccgcacgcgacatcttcctccag
aacgccctgatcgagggggactggcgcacccgccaccacttcttccgcgacaaccgcgcc
ctgatcgcccgactcgaggagctcgaggcgaagacccgacgtcgcgacctgctgatctcc
gacgagcagctcttctccttctacgacgcgcggatcccgaagcacgtcgtctccggccga
cacttcgacacctggtggaagaaggcccgccgcgagaccccggacctgctcaccctcacc
gagcaggacctgctggccgccgacgaggaggtcaccgaggcgatccgctccgacttcccc
gacacctgggtgcagggcgacatcaccctcccgctgagctactccttcggcgaggtcggg
gcgaagggcgccgacggcgtgaccgccacgatccccctcgcggtgctgaaccgcctcgca
ccgcgcggcttcgactggctcgtgcccggcatgcgcgaggagctggtcaccgagctgatc
cgctccctcccgaagccgatccgccgccacctggtccccgcacccgaacgggccaaggcc
gtcgccgggaccctgcacgacgacgaccccgacggcggcgaggcgttcgtcgaggcggtc
gccgacgagctcgtggccctgcccggcgtgcccgaggacctgccgctgtacggccccgag
ttcgacctgacgaagctgcccgcccacctccggatgcacttccgggtcgtggacggcaag
ggccgtgaggtcggcgccggcgatgacctcgaggcgctgaagcagcggctgaagaagcgc
gtggacacgaccgtctcgaaccagtccaccgagatcgcgcgcaccgacctgcccagcttc
cccgcaggcggcgtgccggccgtccacgagtccaccgtcggcggtctgaaggtcaccggc
tacccgtccctcgtcgcccggcgcggcaaggacgggcggctcgagcgggtcgacctcgcc
gtcctcgccacggccgacgagcaggccctcgcccaccgcgagggcgtcatcgcgctgatc
gaccgggagatcggcaccgacctctcccgcgtgctgaacgccctgcccaatcccaccaag
ctcgccgtctccggctccgactatgcctccaccgccgcgctcctggccgacgcctcccgc
gccgcgaccgtgcacctggcggggcgggcccaggtgcgcacccgcgcggagtacgagcag
ctgctggagaccgtgcggcagaggcacgacgagctcgccgccggtgccgtgaaggacgcc
gccgccgcgctcgccgtgaacgcgaagctgcagcgcgagctgggccgggccacctccctc
gcggtcctctcgcatctcacgcagatccgcgagcacgccgcctccctgctcggcgacggg
ttcatctcccgcaccgggatcgcgcacctcggggacctctcccgctacctgcgggccgat
ctgcaccgcctggagaagctgccggagaacccgcgcagggacgagcagctcgcctggcag
atcggggacctcgagcagtactgggccgcacagaagcagaagctctccgcccgtcgccgc
gccgagcccgacgtgcaggagatcgactggctgctcgaggagctgcgggtgagcctgttc
gcgcagaccctcggcacggcgcagaccgtctcggacaagcggatccgcaaggcgatcgcc
gagctcaccgcctga
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