Bradyrhizobium sp. BF49: BF49_4759
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Entry
BF49_4759 CDS
T04337
Name
(GenBank) Transcriptionrepair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brad
Bradyrhizobium sp. BF49
Pathway
brad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BF49_4759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brad03400
]
BF49_4759
Enzymes [BR:
brad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF49_4759
DNA repair and recombination proteins [BR:
brad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BF49_4759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
SecA_DEAD
RecG_dom3_C
AAA_30
AAA_25
Cas3-like_C_2
AAA_22
UB2H
MinC_N
Motif
Other DBs
NCBI-ProteinID:
CUT13679
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All DBs
Position
I:4896735..4900034
Genome browser
AA seq
1099 aa
AA seq
DB search
MAPTRKARATTGAIKTKTKSSSKGSKSKSAKSKNSKSTSSTSQRPDKSASRSAVASSSPL
GMLALHLLEQWEKSGRDGLVFLCDDESRAERLGGVIHALDSSVDVLVFPRLNTLPFDGLE
PSREIAGRRSSVLRRLAKAKKPVFLVSTAEAIMERLPLPASWSRSSLTLKVGAPYSGPEL
ETRLEALGYDLDEEAEYPGGVLFHGKTFEVFPAGALAPFRIEHSGDTIRKIVAVDPIEHE
VVYETAELIIDPMSERIALGATRGQRATLPDYCSRARWIADAGVSTHAESWLGTIEDAAG
RRDAEREYLGQADWKQLKKRISVLPRKAAFISTPEFSKLASPRKALRAFVADMQRGGSRL
LFVAAVEDDLRAMERMSGIKAERLADWSEVTKARSREGALLADFDAGFIGAGRKPLVVVT
ASDVLGSRAHHPQPMARAWNPAFDHPDVPEKGAAIVHLQRGLAVLDGLQTLDMGKGSRRE
MIRLKFAGDNAVLVPPSDLAVIWPYAGEPGKLTLDKADGSSWWARRTEAEAEIQVAAKAL
AKHISQRLRRRAPKLVPPGPAYEKFVARFPYFTTVDQGQAIQDVLDDLAAGHPMDRVICG
DVGFGKTEVALRAAAAVALSGKQVAIAAPTTVLARQHVETFRKRFGPLGIEVGSLSRASS
GPETRETKEGLRRGALKVVVGTQALAAKDVKFADLGLVIIDEEQHFGAAEKAKLSGLAKG
AHSLWMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPIVTRIAPLSDAAIAAALLRERRR
HGQSFLICPRIQDLEPMLARVQSVAPELRIVCLHGRLPVDEIDDRMMSFVDGEADVLLAT
NIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAHLLTESTSEQSEKRLA
VLEEFSKPGAGFAISERDLDLRGAGDLFSEQQSGHVQVFGPVLYSHLLKRASERGSDTGA
DLWVPDLNMPLADMLPEGYVQSEAVRLEIYGRAARCRNDDDLEDLEEEISRRFGRLPPEA
RDFFASARLRIDCKRRGIVRLDVGPEAVAATFLPGRLRKSRGKSQAGALQRDGDRVVYAG
RRDQDPFRRVEEFLELLDA
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcccaccaggaaagcccgggccacgaccggcgcgataaagacaaaaaccaagagc
tcaagcaaaggctcgaagagcaaaagcgcgaaaagcaagaattcgaaaagtaccagctcg
acaagccagcgcccggacaagagcgcctcgcgctccgcggtcgcctcctcatcgccgctc
ggcatgctggcgctgcatctgctcgagcagtgggagaagtccggccgcgacggcctcgtc
ttcctctgcgacgacgagagcagggcggagcgactgggcggtgtgatccacgccctcgat
tcctcggtcgacgtgctggtgtttccgcggctgaacacgctgcccttcgacggcctcgag
ccctcccgcgagatcgcgggccggcgcagctcggtgctgcggcgtctcgccaaggcaaag
aagcccgtcttcctggtgtccaccgcggaagcgatcatggaacggctgccgctgccggcg
agctggtcgcggtcgagcctcacgctgaaggtgggcgcgccctattccgggcccgagctg
gagacccgcttggaggctctcggctacgatctcgacgaagaggcggagtatccgggcggc
gtcctgttccacggcaagacgttcgaagtgtttcccgctggcgcgctcgctcccttccgg
atcgagcattccggagacacgatccgcaagatcgtcgccgtcgatcccatcgagcacgag
gtcgtctacgagaccgccgaattgatcatcgatccgatgtccgagcggatcgcgctggga
gctacgcgcggacagcgggcgactctgccggattattgcagccgcgcgcgatggatcgcg
gatgccggggtatcgacccacgccgagagctggctgggcacgatcgaggacgctgccggc
cgcagggatgcggagcgcgagtatctggggcaggcggactggaagcagctgaagaagcgc
atcagcgtgctgccgcgcaaggccgccttcatctcgacgccggagttctctaagctggcc
tcgccgcgcaaggcgcttcgcgccttcgtcgccgacatgcagcgcggcggatcgcggctg
ctgttcgtcgcagccgtcgaggacgaccttcgcgcgatggagcgcatgagcggcatcaag
gcggagcggctggccgattggagcgaggtgacgaaggcacggagccgcgaaggcgcgctg
ctggccgatttcgacgcggggttcattggcgccggccgcaagccgctcgtcgtcgtgacc
gcctccgacgtgctcggcagccgggcccatcatccccagccgatggcgcgagcctggaac
ccggcattcgatcatcctgatgtgcccgaaaagggcgccgccattgtccatctgcaacgc
gggctcgccgtgctcgatggcttgcagaccctcgacatggggaagggatcacgacgcgag
atgatcaggctcaaattcgcgggcgacaatgccgtgctcgtaccgccgtccgatcttgcc
gtgatctggccctatgctggcgagcccggcaagctgacgctcgacaaggcggacggcagc
agctggtgggcgcggcgcaccgaggcggaagcggaaatccaggtcgcggccaaggctctc
gccaaacacatcagccagcgcctccgccgtcgtgcacccaaactggtgccaccggggccg
gcctacgaaaagttcgtcgcgcggttcccctatttcacgacagtggaccagggccaggcg
attcaagacgtcctcgacgatcttgcggcgggccatccgatggacagggtgatctgcggt
gacgtcggcttcggcaagaccgaggtcgcgctgcgggcggcggccgcagtggcgctgtcg
ggcaagcaggtggcgatcgccgcgccgacgaccgtgctggcgcggcagcatgtcgaaacc
ttccgcaagcggttcggccctctcggcatcgaggtgggaagcctgtcgcgagccagttca
ggcccggagacgcgagagaccaaggaggggctgcggcgcggcgcgctgaaagtcgtggtc
ggcacgcaggcgcttgcggcaaaggacgtgaagttcgccgacctcggcctcgtcatcatc
gacgaagagcagcatttcggcgcagcggagaaggcgaagctttcaggcctcgccaaggga
gcccattcgctgtggatgagcgccacgccgatcccgcgcacgctcgcggcgggacttgcc
ggcttccgggatctcagcgtgatcgcctcgccgccggttcatcgccttcccatcgtgacc
aggatcgcgccgctgtccgacgctgccatcgccgcggcgctgctgcgcgagcgcaggcgg
catggtcagagctttctgatctgcccgcgcatccaggatctggagccgatgctggcccgt
gtgcaatcggtggcaccggagctgcgcatcgtctgtcttcacggcagactgcccgtggac
gagatcgacgaccgcatgatgagtttcgtcgatggcgaggcggacgtgctgctggcgacc
aatatcgtggaaagcggtctcgatattccgcgcgcgaacaccatcgtggtgtgctggccc
gaaaagttcggacttgcgcagctgcatcagctcaggggacgggtgggacgcggcggcacg
cgcgcctttgcccatctgctgacggagtcgacctcggagcagtccgagaagcgtctggcg
gtgctggaggagttcagcaagccgggtgccggctttgcgatcagcgagcgcgacctcgac
ctcagaggcgccggcgatctgttctcggaacagcagtccggccacgtccaggtgttcgga
ccggtgctctacagtcatctgctgaagcgggcgtccgagcgaggcagcgataccggcgcc
gatctgtgggtgcccgatctcaatatgccgttggctgacatgttgcctgaaggctacgtg
caatcggaagcggtccggctcgagatctatggccgcgctgccaggtgccgaaacgacgac
gatctggaagatctggaggaggagatctcgcgtcgtttcggcaggctgccgccggaggcc
cgcgacttcttcgcatccgccaggctccggatcgattgcaagcggcgcggcatcgtcagg
ctcgatgtcgggcccgaggccgtcgccgcgactttcctgccggggcggctgcggaaatcc
agggggaagtcgcaggcgggagcgctacagcgcgacggcgaccgcgtcgtctacgccggt
cgccgtgatcaggacccgttcaggcgcgtcgaggaattcctcgaactcctcgacgcctga
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